Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00673 ATGGGGTTTGAAAAAAAAATTGACAAGTATCAGCTTGTTAGGACCATTGGAGAAGGTAGCTTCTCTAAGGTTAAGCTGGCTGTCAATGGCACCAATGGTCAGAAGGTTGCTGTCAAGGTCATTGATAAGCATATGATCTTAGAAAACAATCTTAAGACTCAGGCAAAACCTCACCCTAACACTTTCCCTTTATCGAGAGGACAACTACTAGACAAGTTGTCCTATGGAGAGAAGTTGAATGAACGTGAGGCAAGAAAACTGTTCCAGCAACTAATTGATGCCCTGGACTACTGCCATAACAAAGGGGTCTATCATCGAGATCTCAAGCCAGAAAACCTGCTTCTTGACAGCAAGGGAAATCTCAAAGTGTCTGACTTTGGATTAAGTGCATTACAAAAGTGTAATGATGTCTTGACCACGCGGTGTGGATCCCCATGTTATGTAGCACCTGAGCTTCTATTGAGCAAGGGGTATAATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATTCTTTTTGAATTACTTGCAGGCTATTTACCATTTAACGACCAGAACTTGATGAACTTATATGGAAAGATATGGAAGTCAGAATATAAATGTCCCACGTGGTTTACTCGGAGTCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTCCTGCAAAGCGGATAACTATATCAGATATTATTGAAGATCCGTGGTTTCAAAAAGATTACAAGCCTGTTTTTGCATCTGAATTTGATCAGAACATTAACTCGGAGGATGTTGATGTTGCTTTCAATTCAATTGAGGAAAATGTCAGAGAGACAACGGTATCTAAGTCCTCAAGTTTCATTAATGCGTTTCAACTAATAGCCATGTCTCGGGATCTTGATCTATCTGGTCTTTTTGTCGAACAGGATGAAAATAAGCAGACAAAAAGGATGGGATCCAAACACACTATCAATGAAACGATAGAAAAAATAGAAGCTGCTGCAACCGATGCAAGACTGTCGATAGAGAAAATTAGCAACTTTAAGGTGATTGAAGTTGCTCCAACTCACTGTGTTGTAGAAATATCAAAATCTACTGAAGATATAAGAACGTATAACAAATTTTGTGAAAGTTTATCAAATCTGCTGAAGCAAAAACCTGGTGTGCCATCACAAAGCGAAGATTCTGTAGATCAATGTGCCTCTGATAGAAAAAAACACGACGCTGAATGCTATGAAGAGCCGAAAAGGGAATATGTCAAACTTTTTCGTGGCTACGAATCTTCCTGA 1266 0.3942 MGFEKKIDKYQLVRTIGEGSFSKVKLAVNGTNGQKVAVKVIDKHMILENNLKTQAKPHPNTFPLSRGQLLDKLSYGEKLNEREARKLFQQLIDALDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALQKCNDVLTTRCGSPCYVAPELLLSKGYNGAAADVWSCGVILFELLAGYLPFNDQNLMNLYGKIWKSEYKCPTWFTRSQKKLIAKILEPRPAKRITISDIIEDPWFQKDYKPVFASEFDQNINSEDVDVAFNSIEENVRETTVSKSSSFINAFQLIAMSRDLDLSGLFVEQDENKQTKRMGSKHTINETIEKIEAAATDARLSIEKISNFKVIEVAPTHCVVEISKSTEDIRTYNKFCESLSNLLKQKPGVPSQSEDSVDQCASDRKKHDAECYEEPKREYVKLFRGYESS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00673 421 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Vian1g00673 421 ProSiteProfiles Protein kinase domain profile. 10 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00673 421 Pfam Protein kinase domain 66 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00673 421 MobiDBLite consensus disorder prediction 377 400 - -
Vian1g00673 421 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 370 - -
Vian1g00673 421 Gene3D Phosphorylase Kinase; domain 1 2 61 - -
Vian1g00673 421 FunFam Non-specific serine/threonine protein kinase 64 243 - -
Vian1g00673 421 SMART serkin_6 10 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00673 421 Gene3D Kinase associated domain 1, KA1 340 377 - -
Vian1g00673 421 Gene3D Kinase associated domain 1, KA1 275 339 - -
Vian1g00673 421 Pfam NAF domain 278 336 IPR004041 GO:0007165
Vian1g00673 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 103 115 IPR008271 GO:0004672|GO:0006468
Vian1g00673 421 CDD CIPK_C 281 377 - -
Vian1g00673 421 SUPERFAMILY Protein kinase-like (PK-like) 7 249 IPR011009 -
Vian1g00673 421 Gene3D Transferase(Phosphotransferase) domain 1 65 265 - -
Vian1g00673 421 ProSiteProfiles NAF domain profile. 275 299 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00673 Vian-Chr1 6670908 6674874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00673 64 375 CBL-interacting serine-threonine protein kinases AT5G57630 56.886 1.34e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian1g00673 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00673 - - vun:114177464 756.903