Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00667 ATGGATAGTCCAATTCGATCGCCAGCTGCCGGTTCAGGCTCCGGCGAAGACAGCCGGCGTGTTAAGTTTTTGTGCAGCTTTCTGGGGAGCATAATGCCCCGTCCCCAAGATGGGAAGCTGCGTTACGTCGGTGGCGAGACACGAATTGTGAGTGTTTGTAGAGATATTAGCTACGAGGAGTTGATGGTGAAGATGAGAGAGCTGTATGATGGGGCTGCTGTGTTGAAGTACCAGCAGCCCGACGAGGATCTTGATGCTCTTGTTTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAAGAGTATGACAAGTTGGGGTCAGGGGATGGATTCACTAGGCTCAGGATATTTTTGTTTTCACAATCCGAGCAGGATGGTTCCTCACATTTCATTGATGGGGATGATTCTGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAATGATGTTGCTGACTTTAGGAGGTTGCAACAAGGAGAGTTTCCAATGATTAGCCCTGTTGAGGATATCCATGTGGCTGGTGAACAGTTTTTCAATCCAATGAGTGTGGAAAGTGGGATTCATACTCACAGAAGTGGGGACCTATCTATGCCACCGTATAATATGCATCATCTCTCGATCCAGCACCCGCAAACCGTGGGCCCAAGGTATACTGAAATGGATTCTCCTTGGAATCCTGCTTATTACTCTCCTAGACACCATGCTCTCCACGACTCCAGATCATTAGTTGAATTTCCATCATCGCCGTCTGGTAGGTACCGAATGCCATTTCCAGAGTTACCAGATAAGTGCATTGATCGAGGGCCGGAAGACTATGCTCGACATCATGTAAACCACCATCCTGTGTATGATAATCAACAGCAGTATGCTGATAATGTTTTGTGGGTGCCGACTGGAGCAGCACATTCTGAAAAGACAGGTTTTCCAGGCAATATTCTTCATGGTTCCCATGTTGTTGATGGGAACAACATATGTGAGCAGTGTCGCATGGGTTTTCAGAGAGGTCAACCACATCTGGAACATTCTAATATAAGTAATGGACTTCTACCGGTTGCTAATCCATGTGGAGAATGCCCCCTGCCAAATAGGGATGCTTTCCCCATGAATGTTGATGCAAAGTTACATCCCGCAATGTATCCCAATGAACCTAATGGTGATCACAGGTCTGTTTATAATGATACTCAAAATCATGAGAGAGGTTGGGGTTTGCAGCATCCAACAACTGCTCGGGTTGAGGAATCAAGAGGACATTTATCTGTATCTGGAAGAGTGGGTGATGTTCCAGTTGCAAATATCTCTCTTGGGCATGGTAGTGTGACCGATGGACACGCCCTGTCGTCCAATTATCTTCATCAGCCGGTTGGACCTGAATTGGGTACTGAACTTTTCCCTGACCAAACCCTGACTGCATCACCACACGTACAAATTGCTCCACTAGAAGAATGCAATGTGCGGTACGGAAATCCATCTTCTCCTTATGGAGTAGACAGTAATTATGCTGTGCCCCGTGGACATCCACCTGGTTTATGGAGGAATACTCCAATTCCTGTTCATTTGGGACCATCTTATGAGGCAAATACCTCACCTCCGCAGGTGAATGGTATGATAAATGCGGCATTAGTCAGGGGAGAAGGCAGTCCAGGGTTTTACATTGGACCAGATACTCAAAATCAATGGGTTGATTCCTCACAGAAATTGACAGGACATGATTGTAAAGCCATCCCAGAATATTCACATGCACATGCTCTGAACTTGAATCCAACACTCCTTGGTCCAGAGAATCAGCACCCAGTTACTGTAGATACCATTCACCCTCCACAGGACGTGAGTACTGGTACCTGCTTGGAACCTTTGCAGGTTCCAAAATCATCTTTTAATATGGTTCATAATCAGGAGGTTTTAAGAAATGACACCCATTTGGCTACAGCAAAGACTTTTGAATCAAATACTTTGCTTGGAGAAGGAATAGTGGTAAAAATTGAGGACAAGGTTAAAGGCCCTGACACGCAGACTGTATACTATTCAGAGCAAAATAAAGTTGCTGAGAATGCATGTCCAGCTGCTGCTTCTGTTGATTCTAATAATTCAAAGTCTAAACCTGAAGGAGACTGCAGGCATGTTGAGAAACTGGCTGATGAGGACCATTCTGTTCCACAAGATTATAAGCATTTAGGTAATCAATTAAGCCTCTTGCCTGAGTTGATTGCTTCTGTGAAAAGGGATGCAGTAGAAGTTGCTGAAGTGGTGAAAACTGCTGCTAAGGATGACCCAGCCAATTCTCATAATCAAAATTTAGACACCAAGGGACAGACAATAAATGAAGTAGAGCCAGAGAATGCTCATGGTGATTTAGAATTGAACTCTGAAAGTGACCATGTAGATACTTCTAAAATTGAGCCTACGAAGGCTGAGGAAGAAGCAATTGCCAGGGGATTGCAGACTATTAAAAATGATGATTTGGAGGAGATCCGCGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGCTCTGACGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTCGCTGGAAGGCCATCTGAAAGAGCAAGATTGATTACAGATTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCTGACAGTTCTTTAGCAACAGTCACAGAATTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATTGATCGTCGTAAGAGACTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAATATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCTCAACGCCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTTAAACAGAACACTCTAGTGTCTGGTGGAGTACGTGGGACTTTGCCATGGATGGCACCTGAGCTTCTTAGTGGGAAAAGCAATATGGTATCGGAGAAGATTGATGTGTACTCATTCGGAGTAGTTATGTGGGAGTTGCTCACAGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGTATCGTGAACAACAGTTTACGTCCTCAAATACCATCATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTGCAGAAAGACCATCATTTTCAGAAATTTCCAAGAAGCTAAGGATAACTTGCACTACAACATGGTTTCTCTCCCAGAAGCAGCATGGTGTTCTGAAAAATGCTACTTGTGGTGGAACATCAATATATCACAGTGATGAGGGTGATGGTAGCAATAGTTGTGGCTTTACTATCACTAAGGAACCATGCCTTCTGGAGGGATGTGTATATAAACCAACCACCAACATGTCTCCTGTGCTTTCACATGGAGAGGATAATGACGAATTCTGCTTCCCATTTTGA 3492 0.437 MDSPIRSPAAGSGSGEDSRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVCRDISYEELMVKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDVADFRRLQQGEFPMISPVEDIHVAGEQFFNPMSVESGIHTHRSGDLSMPPYNMHHLSIQHPQTVGPRYTEMDSPWNPAYYSPRHHALHDSRSLVEFPSSPSGRYRMPFPELPDKCIDRGPEDYARHHVNHHPVYDNQQQYADNVLWVPTGAAHSEKTGFPGNILHGSHVVDGNNICEQCRMGFQRGQPHLEHSNISNGLLPVANPCGECPLPNRDAFPMNVDAKLHPAMYPNEPNGDHRSVYNDTQNHERGWGLQHPTTARVEESRGHLSVSGRVGDVPVANISLGHGSVTDGHALSSNYLHQPVGPELGTELFPDQTLTASPHVQIAPLEECNVRYGNPSSPYGVDSNYAVPRGHPPGLWRNTPIPVHLGPSYEANTSPPQVNGMINAALVRGEGSPGFYIGPDTQNQWVDSSQKLTGHDCKAIPEYSHAHALNLNPTLLGPENQHPVTVDTIHPPQDVSTGTCLEPLQVPKSSFNMVHNQEVLRNDTHLATAKTFESNTLLGEGIVVKIEDKVKGPDTQTVYYSEQNKVAENACPAAASVDSNNSKSKPEGDCRHVEKLADEDHSVPQDYKHLGNQLSLLPELIASVKRDAVEVAEVVKTAAKDDPANSHNQNLDTKGQTINEVEPENAHGDLELNSESDHVDTSKIEPTKAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLITDFWKEALMLSSLHHPNVVSFYGIVRDGPDSSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQNTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGVVMWELLTGDEPYADMHCASIIGGIVNNSLRPQIPSWCDPEWKSLMESCWASDPAERPSFSEISKKLRITCTTTWFLSQKQHGVLKNATCGGTSIYHSDEGDGSNSCGFTITKEPCLLEGCVYKPTTNMSPVLSHGEDNDEFCFPF 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00667 1163 Pfam Protein tyrosine and serine/threonine kinase 822 1084 IPR001245 GO:0004672|GO:0006468
Vian1g00667 1163 SUPERFAMILY Protein kinase-like (PK-like) 813 1083 IPR011009 -
Vian1g00667 1163 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 814 908 - -
Vian1g00667 1163 ProSiteProfiles Protein kinase domain profile. 821 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00667 1163 SMART serkin_6 821 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00667 1163 CDD PB1_UP2 24 120 - -
Vian1g00667 1163 Gene3D Transferase(Phosphotransferase) domain 1 907 1106 - -
Vian1g00667 1163 Gene3D Phosphorylase Kinase; domain 1 807 906 - -
Vian1g00667 1163 SUPERFAMILY CAD & PB1 domains 37 127 - -
Vian1g00667 1163 PRINTS Tyrosine kinase catalytic domain signature 940 958 IPR001245 GO:0004672|GO:0006468
Vian1g00667 1163 PRINTS Tyrosine kinase catalytic domain signature 903 916 IPR001245 GO:0004672|GO:0006468
Vian1g00667 1163 PRINTS Tyrosine kinase catalytic domain signature 1055 1077 IPR001245 GO:0004672|GO:0006468
Vian1g00667 1163 PRINTS Tyrosine kinase catalytic domain signature 1011 1033 IPR001245 GO:0004672|GO:0006468
Vian1g00667 1163 PANTHER SERINE-THREONINE PROTEIN KINASE 87 1084 - -
Vian1g00667 1163 Pfam PB1 domain 36 121 IPR000270 GO:0005515
Vian1g00667 1163 SMART PB1_new 35 120 IPR000270 GO:0005515
Vian1g00667 1163 Gene3D - 39 123 - -
Vian1g00667 1163 CDD STKc_MAP3K-like 827 1084 - -
Vian1g00667 1163 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 40 122 - -
Vian1g00667 1163 ProSitePatterns Protein kinases ATP-binding region signature. 827 848 IPR017441 GO:0005524
Vian1g00667 1163 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 909 1100 - -
Vian1g00667 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 946 958 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00667 Vian-Chr1 6634227 6640002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00667 16 1090 MAP Kinase Kinase Kinase AT5G57610 53.190 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vian1g00667 PK_Tyr_Ser-Thr 4.1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00667 - - gmx:100779077 1936