Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00657 ATGGGTTCGGTGTCCAATCCTGAATGGACAGATAGTGGCATAGTGGAACATAGGAACCACTGCCACTACCTTCTACACCCTCTTATGGCCATGAATTTCCATCCCAATACTTCTCTTCACCTAAGCCAATCCGATGATGAGATCAATCACCTCAATCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCTTCGTCTTCTCCCTCACCTATAAGTCCCATTGAGCCGCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTTTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACTCTAGCCAAGAAGAGCAGGGAAATGAGTTCAACCATGCAGTCTTACGGAGCACCGGAGCAAAGATCAAACTTCAGTCCTTCACACCATCTTGGTCGTGCTCTTGGGGTTAACGTTGTGGATAACCAAGGACAAAGCTATGTGAGGCTCGGCGGAAGAAAAGAATACAGCTTTGGAAGCAAGGAAGGAGTGGCTTCCTGGTCAAGGGGTTATGCTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTGAGGCTTTGA 582 0.4708 MGSVSNPEWTDSGIVEHRNHCHYLLHPLMAMNFHPNTSLHLSQSDDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQSYGAPEQRSNFSPSHHLGRALGVNVVDNQGQSYVRLGGRKEYSFGSKEGVASWSRGYASEHVQEDIGQLDLSLRL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00657 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Vian1g00657 193 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 42 139 IPR044246 GO:0009788
Vian1g00657 193 SUPERFAMILY beta-beta-alpha zinc fingers 75 105 IPR036236 -
Vian1g00657 193 Gene3D Classic Zinc Finger 70 133 - -
Vian1g00657 193 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Vian1g00657 193 FunFam Zinc finger protein 2 57 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00657 Vian-Chr1 6540667 6541840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00657 31 113 C2H2 Transcription Factor Family AT5G57520 67.816 1.86e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g00657 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00657 - - vra:106768043 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00657 1 6540667 6541840 Vian1g00657 1 6540667 6541840 ECH