Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00656 ATGGAACCTTCTCCACAAGAATTCATCTTCAGATCCCCACTTCCTGATATTCCCATTCCCACGCACCTTCCACTACACTCTTACTGCTTCCAAAACCTCTCCCAATTCCATCACCGAACATGCCTTATCGACGGCGACACCGGCGAAACACTCACCTACGCCGAAGTCGACCTCGCAGCCCGCCGCATCGCCGCCGGTCTCCACAACATCGGCATCCGCCAGGGTGACGTCGTCATGCTCGTCCTCCGCAACTGCCCCCAATTCGCCCTCGCCTTCCTCGGCGCCTCCCACCGCGGCGCCGTCATCACCACTGCCAACCCCTTCTACACTCCGCAGGAGCTGGCCAAGCAAGCCACCGCCACCAAAACCAGGCTCGTCATAACACAATCCGCGTACGTGGACAAAATCAAGAGCTTCGCCGACAGCACTGACGTCATGGTCATGTGCATCGATACATGTCCCCCTGAGAACGACGGCGTTTTGCATTTCTCCACGCTAACTAACGCCGACGAAACGGAAGCCCCCGCCGTTAAGATTAGCCCTGACGACGTCGTCGCGCTTCCGTTTTCTTCTGGCACTTCGGGGCTCCCCAAGGGCGTTATGTTGTCGCATAAAAACTTGGTCACCACTATCTCGCAGTTAGTTGACGGCGAAAACGCGCACCAGTACACTCACAGCGACGATGTGCTCCTCTGCGTGCTGCCTATGTTTCATATCTATGCTCTAAATTCAATTTTACTCTCCGGGATTCGATCCGGTGCGGCCGTTCTCATTGTACAGAAGTTTGAGATGACGACTCTGTTGGAGCTGATCCAGAAGTACAGGGTAACCGTTGCGTCGTTTGTGCCACCCATCGTTTTGGCGTTGGTTAAGAGCGGAGAGGCCCACCGATACGACCTCTCGTCCGTTCGAGCCGTCGTCACCGGCGCCGCACCCTTGGGAAAGGAACTACAAGAAGCTGTGGAATCAAGGCTACCACACGCCACTTTCGGACAGGGGTATGGGATGACAGAAGCAGGACCACTTGCGATTAGCATGGCATTTGCAAAAGAACCCTCAAAGATAAAACCTGGTGCATGCGGAACCGTTGTCAGAAACGCTGAGATGAAAATCGTCGACACAGAAACTGGTGTTTCTCTTCCCAGAAACGAAACCGGTGAAATTTGCATAAGAGGCACAAAGGTTATGAAAGGATATCTAAACGACCCAGAGGCTACAGAGAGAACCATAGACAAAGATGGATGGCTCCACACAGGAGATATTGGTTACATCGACGATGATGACGAACTCTTCATTGTTGATAGGTTAAAGGAATTGATCAAATACAAAGGGTTCCAAGTACCTCCCGCTGAGCTCGAAGCTTTGTTAATTGCTCACCCAGACATCTCTGAAGCTGCCGTTGTACCCATGAAAGATGAAGCTGCGGGAGAAATTCCTGTTGCATTTGTAGTAAGATCAAAAGGTTCTGAGATCACTGAAGATGAGATAAAGAAATACATTTCACAACAGGTGGTGTTTTACAAGAGAATTGGTCGGGTTTTCTTCACAGACTCTATTCCTAAAGCAGCCTCAGGCAAAATTCTGAGGAAGGTACTAAGTGCAAGAGTTAACGAAGGTGTGGTGGTGGCCAATTAG 1635 0.5125 MEPSPQEFIFRSPLPDIPIPTHLPLHSYCFQNLSQFHHRTCLIDGDTGETLTYAEVDLAARRIAAGLHNIGIRQGDVVMLVLRNCPQFALAFLGASHRGAVITTANPFYTPQELAKQATATKTRLVITQSAYVDKIKSFADSTDVMVMCIDTCPPENDGVLHFSTLTNADETEAPAVKISPDDVVALPFSSGTSGLPKGVMLSHKNLVTTISQLVDGENAHQYTHSDDVLLCVLPMFHIYALNSILLSGIRSGAAVLIVQKFEMTTLLELIQKYRVTVASFVPPIVLALVKSGEAHRYDLSSVRAVVTGAAPLGKELQEAVESRLPHATFGQGYGMTEAGPLAISMAFAKEPSKIKPGACGTVVRNAEMKIVDTETGVSLPRNETGEICIRGTKVMKGYLNDPEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVPPAELEALLIAHPDISEAAVVPMKDEAAGEIPVAFVVRSKGSEITEDEIKKYISQQVVFYKRIGRVFFTDSIPKAASGKILRKVLSARVNEGVVVAN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00656 544 Gene3D - 4 436 IPR042099 -
Vian1g00656 544 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Vian1g00656 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 533 - -
Vian1g00656 544 Pfam AMP-binding enzyme 32 442 IPR000873 -
Vian1g00656 544 Gene3D - 437 541 IPR045851 -
Vian1g00656 544 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Vian1g00656 544 SUPERFAMILY Acetyl-CoA synthetase-like 11 538 - -
Vian1g00656 544 CDD 4CL 19 532 - -
Vian1g00656 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 11 437 - -
Vian1g00656 544 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00656 Vian-Chr1 6516939 6521613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00656 7 504 Monolignol Biosynthesis Gene Families AT1G51680 65.545 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00656 K01904 - gmx:548034 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00656 1 6516939 6521613 Vian1g00656 1 6516939 6521613 ECH