Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00649 ATGGATACTGACGAGGAGTGCTCAATTGTTCTTGAATTACCTGAAAGGGATCCTTTCTCTGACAAAAAGAAGAAATTACTACAAAGTAAAGGTTTTGGTCCCAAAGAACGGATATACCTCAGGAGCTCTTCAAAACCTGACTGGATGAGTGCTACTGTGGAGGTGTTACTTCAGATTGCTCGGATCATACAATTAAATGAGCTGGAACTTTATTTTGCTGAAGAGGACGTATGCACGTCGATGGAATTTTACAGTCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTGCTCACTGACATATCACTTTCTAGTTGTTCACATCTCCATACAAATATCCTGCAAGGGTTACGCCAAACAATTCTTGATTTAATTACTGATGTGGGGGACAAAAACAGTGTGAAGGGGGGAGTAGTTCAAAAAGACCATAGTTGGACAAAATCTCTTCCCGAGAAGAAAGGACAACATCACAACCTGCATTTGATGAAGTACCTTCTATATGGCGGAAGTTCGGGAGCAACGGAATTGCATGATCAGTATTTCGGGGACAAACCTGTGTACACGCCAGAAAAGCTCGTGGTGGTTGTTGCGGTGGAGCAACGAAAAGGCAAGTATGGTGTCTTAAAAGAAATTGACGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGACAAGTACAACAGTGATTCAAAATTCAAAATTTATTTTGACACACTCCCAGAAAAATTTAATACAGGTTTGAGTTTCAGCATTGAAGCAATTACAGTGTTAGATGGAACCTTGCTGTTGGAAGAGATAATGCAAGCAAGACAGTTCCTGCATGCTCAATATGATGAGTTGTTCCCTGCTCTGTGCAATACTTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCTAATAGCATGAAGATAATGTATTCCGATGGAAAGATAAAAACATGCTTGATCCCTATTGCTGGATTTCTCAATCATTCACTGTGCCCGCATGTTATGCACTATGGCCAAGTGGATCCTGCAAAAAATTCACTGAAATTTTGTCTATCAAGACCATGCAAATCTGGAGAAGAATGCTGCTTAAGCTACGGCAACTTCTCCAGCTCTCATCTAATTACCTTTTATGGTTTTTTACCACAAGGAGACAATCCATATGATGTTATTCCGTTAGACATTGACGGTGCCGACGTTGATTCTGGTGACGATATACCCAAGTCCAACTGGACGAGTCACATGTTGCAAGAAAACTTGGAAAATGAGCTGGAAGTTCTTGAAAATCTCAAAGATATCTTTGATGACATGATTGAAAATATGGGCGAAATCGATCTTAATGACAGAGAAAACTGCTGTTGGGATGAAAAATTGGCTATGGATTTTAAAAGTACACAAAGACGAATTGCCTGTTCTGTTTCAACCTCGTGTCTCGCTGGTATGGATATGTTAAAGAACGAACTATGCAAGTGCATGGCTGAGGACATCCTAGGCTAA 1530 0.4013 MDTDEECSIVLELPERDPFSDKKKKLLQSKGFGPKERIYLRSSSKPDWMSATVEVLLQIARIIQLNELELYFAEEDVCTSMEFYSPRNELEALNSIVLLTDISLSSCSHLHTNILQGLRQTILDLITDVGDKNSVKGGVVQKDHSWTKSLPEKKGQHHNLHLMKYLLYGGSSGATELHDQYFGDKPVYTPEKLVVVVAVEQRKGKYGVLKEIDGISSETILLLWSMKDKYNSDSKFKIYFDTLPEKFNTGLSFSIEAITVLDGTLLLEEIMQARQFLHAQYDELFPALCNTFPDIFPPELYTWEKFLWACELWYSNSMKIMYSDGKIKTCLIPIAGFLNHSLCPHVMHYGQVDPAKNSLKFCLSRPCKSGEECCLSYGNFSSSHLITFYGFLPQGDNPYDVIPLDIDGADVDSGDDIPKSNWTSHMLQENLENELEVLENLKDIFDDMIENMGEIDLNDRENCCWDEKLAMDFKSTQRRIACSVSTSCLAGMDMLKNELCKCMAEDILG 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00649 509 Pfam SET domain 214 378 IPR001214 GO:0005515
Vian1g00649 509 SUPERFAMILY SET domain 208 399 IPR046341 -
Vian1g00649 509 Coils Coil 424 451 - -
Vian1g00649 509 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 213 440 - -
Vian1g00649 509 FunFam Transcription factor, E2F and DP-related 145 392 - -
Vian1g00649 509 Gene3D - 2 114 IPR036464 -
Vian1g00649 509 CDD SET_LSMT 190 392 - -
Vian1g00649 509 Gene3D set domain protein methyltransferase, domain 1 174 392 - -
Vian1g00649 509 FunFam SET domain-containing protein 4 142 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian1g00649 SET 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00649 K19199 - gmx:100778605 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00649 1 6401721 6416755 Vian1g00649 1 6401721 6416755 ECH