Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00636 ATGTATTCGAGTTCGAGCCAGTTCGACGGCAACGCAGCCTTCTCTGGAGGCGGATTTATGCCTTCTCAGGCCACTCAGGCCACTGATCCTTCATTGGTTACCTCCAAGAATCGCGATGCTCAGTCCTTGCTTCCTCTAACAGTGAAGCAAATATACGATGCGCTTCAAACAAACGATGATAAAGCCAATTTGATTGTTGACGGTGTGGACGTTAATAATGTTACTCTTATAGGAAGGGTGTGCAACAAAGCCGAACGAGTTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGGAAGATTGAGTGTAATAAATGGTTTCATGAAGCTGCTGATACAAATGAAGCAGAGGCTATCTTGGAAGGAATGTATGCGAGGCTCCATGGACACTTGAAAAACTTCCAGGGTAAAAGGACCTTAAATATTTTCCATTTCAGGCCTGTGACTGACTTTAACGAGGTTGCGAGTCATTTCATAGATTGCATACATGTGCATCTCCACAATTCCAGGATTCGGAGTAGTGTCCTTAATCAGCAACATGGAATGAATTCTACGCCAATTACTCCCACAATGGGCTATCAAGCTCAAGTTTTTCCATCAACAAATCACTTCTCCGATCAACATGTCAATGGCCAGAAGAGTGCTGAAAATATGATCTTAGATTTTCTGCATCTTCCCGCCAACAGGTCAAGGAATGAGGGAGTCCATCGCGATCATATTGCACAGCATCTTCAAATTTCTTTAGAGAAGCTCACGCTGGCTATGAAAAGTCTTATCGATGAAGGTGCCGTTTATGAAACCATAGGTGATCACTATAAATCAATCATCAATGGTTGA 837 0.4277 MYSSSSQFDGNAAFSGGGFMPSQATQATDPSLVTSKNRDAQSLLPLTVKQIYDALQTNDDKANLIVDGVDVNNVTLIGRVCNKAERVTDVTFVLDDGTGKIECNKWFHEAADTNEAEAILEGMYARLHGHLKNFQGKRTLNIFHFRPVTDFNEVASHFIDCIHVHLHNSRIRSSVLNQQHGMNSTPITPTMGYQAQVFPSTNHFSDQHVNGQKSAENMILDFLHLPANRSRNEGVHRDHIAQHLQISLEKLTLAMKSLIDEGAVYETIGDHYKSIING 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00636 278 PANTHER REPLICATION PROTEIN A-RELATED 7 275 IPR040260 -
Vian1g00636 278 FunFam Replication protein A 32 kDa subunit 207 276 - -
Vian1g00636 278 Pfam OB-fold nucleic acid binding domain 74 142 IPR004365 GO:0003676
Vian1g00636 278 FunFam replication protein A 32 kDa subunit A-like 36 170 - -
Vian1g00636 278 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
Vian1g00636 278 Gene3D - 35 170 IPR012340 -
Vian1g00636 278 CDD RPA2_DBD_D 73 166 - -
Vian1g00636 278 Gene3D - 206 276 IPR036388 -
Vian1g00636 278 Pfam Replication protein A C terminal 165 270 IPR014892 -
Vian1g00636 278 SUPERFAMILY "Winged helix" DNA-binding domain 210 275 IPR036390 -
Vian1g00636 278 Coils Coil 241 261 - -
Vian1g00636 278 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00636 Vian-Chr1 6283360 6287422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00636 4 275 Core DNA Replication Machinery Family AT2G24490 44.727 5.25e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00636 K10739 - gmx:100782819 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00636 1 6283360 6287422 Vian1g00636 1 6283360 6287422 ECH