Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00635 ATGGACTCTTCTTCATCACCGCCAAACAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCCTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTTTTCCACTCCTTCGCCTCTTATCCAGCTCTCACACTCACAGGCAGCAGCACCGTGGATGCACCACCGGAGGCAGCAGGCCTCGGAGGGGCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTTGAGGACTTTCTTGGCAGTTCCGCCACAGCAGACACCACCGCCACGGGTGCACCGCCACAACTTCCGCAGTTCTCCACTGACAACAACCTATACGAATCGGAGCTGAAGACAACAATAGCCGCCTGCTTTCCTCGCGGCTTCGCCGCCGAAGCAAGCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTGGACACCTTCGGCCAACGTACTTCCATCTACCGTGGCGTCACCCGGCACAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGGAGAGATGAAGAACATGACGAGGCAGGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCCGAGGCCTATGACATTGCAGCTATAAAATTCAGGGGGTTAAATGCAGTCACAAACTTCGACATGAGTCGCTACGACGTGAAGAGCATTGCAAACAGCACACTTCCCATTGGGGGTTTGTCTAGCAAGAACAAGACATCCGCGGATTCGGCATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCGGACGAACGAGATCCGTCATCAGCTTCATCCGTGACCTTTGGATCACAGCAGCAGCCTTCCAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCACAATCCTACTCTCGACAACAGTGGGGTCAGGAACACTGCTAGTGTTACTACAACTTCACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAATACCGGCAGTGAAAACAACGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAGCAAAGTGGTCATGGAAATGGGAATGGTCATGGTCATGGAAATGGAAGCGGTGGTTCTTTAAGCTGTTCAATCCCATTCGCCTCGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACTGCAACTGGATTGGACCTACTCTGCACGCATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACCCCGATATTTGGCATGGAATGA 1560 0.5135 MDSSSSPPNNNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFASYPALTLTGSSTVDAPPEAAGLGGATNLSIFTAAPKFEDFLGSSATADTTATGAPPQLPQFSTDNNLYESELKTTIAACFPRGFAAEASTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKTSADSASESKSHEASRSDERDPSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGVRNTASVTTTSPFQMDLSSAPSNTGSENNAAFFSGGGIFVQQQSGHGNGNGHGHGNGSGGSLSCSIPFASPIFSLNSNTSYESSAGYCNWIGPTLHAFQSHAKPSLFQTPIFGME 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00635 519 ProSiteProfiles AP2/ERF domain profile. 253 311 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 SMART rav1_2 253 317 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 SMART rav1_2 151 223 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 Gene3D AP2/ERF domain 151 219 IPR036955 GO:0003700|GO:0006355
Vian1g00635 519 Gene3D AP2/ERF domain 253 313 IPR036955 GO:0003700|GO:0006355
Vian1g00635 519 MobiDBLite consensus disorder prediction 326 376 - -
Vian1g00635 519 ProSiteProfiles AP2/ERF domain profile. 151 217 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 CDD AP2 252 313 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 Pfam AP2 domain 253 303 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 Pfam AP2 domain 151 209 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 FunFam AP2-like ethylene-responsive transcription factor 252 313 - -
Vian1g00635 519 SUPERFAMILY DNA-binding domain 150 219 IPR016177 GO:0003677
Vian1g00635 519 FunFam AP2-like ethylene-responsive transcription factor ANT 150 219 - -
Vian1g00635 519 CDD AP2 150 219 IPR001471 GO:0003700|GO:0006355
Vian1g00635 519 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 402 - -
Vian1g00635 519 MobiDBLite consensus disorder prediction 356 376 - -
Vian1g00635 519 SUPERFAMILY DNA-binding domain 252 313 IPR016177 GO:0003677
Vian1g00635 519 MobiDBLite consensus disorder prediction 340 355 - -
Vian1g00635 519 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00635 Vian-Chr1 6269647 6272759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00635 96 519 AP2-EREBP Transcription Factor Family AT5G57390 56.473 1.33e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vian1g00635 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00635 K09285 - gmx:100797828 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00635 1 6269647 6272759 Vian1g00635 1 6269647 6272759 ECH