Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00634 ATGGCTACAGATTCGTCTTTTGAGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCGCATGGTGCATCTGAGATACTGCAGTCATGGAGCCGTCAGGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAAAATCTTCTTAAAATTGTTTCTGAAAAGAAATCAGGGGGGCATGAAACTGCGACAGACCCTGAACCACATTCTTCGCCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCAGTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATGGTAGTGATTCTGTTAATACTACATACTGCAAGAACTCAGCCTGCAAAGCTACCATGAATCAAACAGATGCATTTTGTAAAAGATGTTCATGCTGCATTTGTCATCAATACGATGATAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTTTGAAACATGATGGTTCTGGAATTGTCAAAGATGGGGATCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGCCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGAATTGTGAACAGGCTTTCATCAGGACCCGAGGTTCAGAAACAATGTGGTTTTGCTCTTGAATCGCTTGATTCACTGCTTTCGAAAAGGATCTTGCCATCATCACCCAATCCAACAACTCAAGATGCACATCTGGTGGCTCCTAATATGGTGAGGTTTGAAGATGTCAGTGCTACATCCCTGACTATTATTTTGGGTTCCGAAGAACCCTCTGGTGAAAACATCGCTGCTTACACCATGTGGTATCGCAAAGCTGATGAAGTGGACTATCCGATGGAGCCGACATGCACCTCGCTGGTACCAAATAGAAGGTTCAGTGTCAGGGGTCTACTTCCAGGTACAGAATACAGATTCAAAGTTGTTTCAAATGATTCGAGGGTATCAGGTGTGTGCGAAGTTCAAATCTCAACAGAGCTTGGGGAGGATGAAGTCCCTAATTGCTCTGCAACAGAGAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTAGAAGATGAAACTAATAACTGCAATCCATACAGTGACCTGACCAATAACCGAGCTGGTCATTATCCATCTTTTCGCAAGGAAAGCGACCAGCTTGCTTCTGGAAATTTATCTAATGATGGTGTTAACTGTTCCAACATAGATGTTGTGGGTCTTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTGTAGGAATGACTGCCTCCATACCCAGTTCTGATGTGCTAAAGCTGGAAGACAAGCACTCGCCGGAGGAACAAGTGACTGAGGACATCATGAGCATTGACGATGGTTTGAATTCCCCAGTTGTAACGGGTAGGGAATGTGTGCCGTGGGTAGGTAGCTCGGAAGGAGGGTTGCCAAATACTCCATGCAAGTTGGAAAGCCTTAAGGATGGAGCAGGAAGGAGTGGAAGATCGAAGTCGAGTGCGAAAGATCAAGAAAATGGATCAGGGAAAAGGGAGGGACCCCAGGATGGAAGCACATCCAAGAAGAGAAGCGGAGAAAGGCAAGATGAGGGCCGCTTGACCAATGGATTTTCGGAGCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAATGTGAAGGGCACATAGAGAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAATATCAGTGGTGCCATCGGGGTTCTGCATGAAGCTTTGGCATTGA 2217 0.4411 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEILQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHETATDPEPHSSPASGQKPAKRQRKSENPSQLPVPVTSISVNNGSDSVNTTYCKNSACKATMNQTDAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIVKDGDRPKLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDSLLSKRILPSSPNPTTQDAHLVAPNMVRFEDVSATSLTIILGSEEPSGENIAAYTMWYRKADEVDYPMEPTCTSLVPNRRFSVRGLLPGTEYRFKVVSNDSRVSGVCEVQISTELGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTNNRAGHYPSFRKESDQLASGNLSNDGVNCSNIDVVGLPPDADSLSDKQHAVGMTASIPSSDVLKLEDKHSPEEQVTEDIMSIDDGLNSPVVTGRECVPWVGSSEGGLPNTPCKLESLKDGAGRSGRSKSSAKDQENGSGKREGPQDGSTSKKRSGERQDEGRLTNGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRISVVPSGFCMKLWH 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00634 738 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Vian1g00634 738 SUPERFAMILY Fibronectin type III 346 425 IPR036116 GO:0005515
Vian1g00634 738 MobiDBLite consensus disorder prediction 589 645 - -
Vian1g00634 738 CDD FN3 346 420 IPR003961 GO:0005515
Vian1g00634 738 MobiDBLite consensus disorder prediction 601 645 - -
Vian1g00634 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 738 IPR044514 GO:0010048|GO:0040029
Vian1g00634 738 Pfam Fibronectin type III domain 346 421 IPR003961 GO:0005515
Vian1g00634 738 Gene3D Immunoglobulins 329 430 IPR013783 -
Vian1g00634 738 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Vian1g00634 738 MobiDBLite consensus disorder prediction 114 129 - -
Vian1g00634 738 MobiDBLite consensus disorder prediction 442 486 - -
Vian1g00634 738 MobiDBLite consensus disorder prediction 442 490 - -
Vian1g00634 738 CDD PHD_VIN3_plant 161 226 - -
Vian1g00634 738 MobiDBLite consensus disorder prediction 85 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00634 Vian-Chr1 6244236 6248685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00634 4 619 PHD Gene Family AT4G30200 47.779 1.28e-166 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00634 - - gmx:100794721 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00634 1 6244236 6248685 Vian1g00634 1 6244236 6248685 ECH