Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00631 ATGAGGTATATTCGGAGCAACAGCTTCAAGAGGTTCTTCTCCTTTGGAAGACGTAGTTCAAGGGAGCAAGTTCTGAGTCCTAATGGTGGAGAAAGTCACGAGACTCTTCCGTCTAAAGAAGAGCCTTCTGGAAGACCCTCTTGGAAGTGCTTCTCTTATGATGATTTGTTTGATGCCACAAATGGCTTCAGCTCAGAAAATTTGGTTGGAAAGGGAGGGTATGCGGAAGTGTACAAGGGGACAATGAATGGGGGAGAAGAAATTGCTGTGAAGAGACTCACAAGAACTTCGAGGGACGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAATGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGAGTTATCTTCTAGAGGTTCTGTTGCATCCCTTCTTCACGATGAAAAGTTGCCCCCTTTAGATTGGAAAACGAGGCACAAGATAGCCATTGGAACTGCTCGCGGCCTCCACTACTTGCATAAGGGCTGCAAAAGGAGGATAATCCACCGGGACATTAAGGCATCAAACATTTTGTTAACAAAGGATTTTGAGCCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAGTGGACTCATCATTCCATTGCCCCAATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTGTTTGCCTTTGGTGTGTTCTTGCTGGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCACACCAAAGCTTACACAGCTGGGCCAAACCAATTTTGAACAAGGGTGGGATTGAAGAGTTGGTAGATCCAAGGCTTGAAGGGACTTATGATGTTACACAGTTAAAAAGATTTTCCTTTGCTGCATCTCTCTGCATTCGAGCTTCTTCGACTTGGCGACCCACCATGACTGAGGTATTAGAGATAATGGAAGAGGGAGAAACAGATATGGAAAAGTGGAAAATGCCAGAAGAAGAAGAGGAGGAGGAAGAAGAAGAATTCTGGGGATTTGAGGATCTGGAATATGAATACGATAGCTCATTTTCTATGTCATTACTTGATTCCATTGGAAGCACTGGTTAG 1143 0.4401 MRYIRSNSFKRFFSFGRRSSREQVLSPNGGESHETLPSKEEPSGRPSWKCFSYDDLFDATNGFSSENLVGKGGYAEVYKGTMNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSRGSVASLLHDEKLPPLDWKTRHKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGGIEELVDPRLEGTYDVTQLKRFSFAASLCIRASSTWRPTMTEVLEIMEEGETDMEKWKMPEEEEEEEEEEFWGFEDLEYEYDSSFSMSLLDSIGSTG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00631 380 Gene3D Phosphorylase Kinase; domain 1 35 139 - -
Vian1g00631 380 MobiDBLite consensus disorder prediction 22 45 - -
Vian1g00631 380 ProSiteProfiles Protein kinase domain profile. 63 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00631 380 FunFam Putative receptor-like serine/threonine-protein kinase 141 356 - -
Vian1g00631 380 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Vian1g00631 380 CDD STKc_IRAK 69 332 - -
Vian1g00631 380 SMART serkin_6 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00631 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Vian1g00631 380 FunFam Putative receptor-like serine/threonine-protein kinase 31 139 - -
Vian1g00631 380 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Vian1g00631 380 Pfam Protein tyrosine and serine/threonine kinase 66 270 IPR001245 GO:0004672|GO:0006468
Vian1g00631 380 Gene3D Transferase(Phosphotransferase) domain 1 141 356 - -
Vian1g00631 380 PANTHER OS08G0249100 PROTEIN 34 361 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00631 Vian-Chr1 6214190 6217745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00631 49 351 Receptor kinase-like Gene Family AT1G60800 42.765 1.55e-71 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian1g00631 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00631 - - gmx:100305398 691.419