Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00620 ATGTCCGTAACCGTGAAAGCATGCTGCACTGTGAGGCCAATAGAGGCAACATGGTGCGGACGCGTAGCTTTATCTGAATGGGATCAAACAGGCAAAGTAACCCACGTGCCCTTTATCTACTTCTACCGTCTTCCACAAAACTGCCTCTCTCAATACAACACCATTGCTTCCACCTTGAAGGACTCATTAAGCCGAGTCCTGGTGCCGTTTTATCCACTTGCCGGTCGTTTGCATTGGACAAACAATGGACGTTTAGAAATTGATTGCAATGCCACCGGCGTTCGATTCATTGAAGCCGAATCATCATCAACCTTACAACATTTAGCTGATTTTTCATCTTGTTCGGAACACCACTACCTTGTCCCTGCTGTGGACTACTACTCCCTACCAATTCACGAGTTGCCGTTGGTTCTGGTTCAGCTGACGAAGTTCAAGTGCGGTGGCATTTGTATTGGCGTAACACTTTCGCACGCAGTTGTGGATGGACCAAGTGCACTGCACTTCGTATGTGAGTGGGCAAGGCTTTCACGGGGCGAGCCTCTGCGTACGGTGCCATTCCTTGACCGGAAAATTTTGCGTGCTGGGGAGCCTCCTTTGGTGCCACTAACAAAATGTCACGTTCACACGGAGTTCAATGATCCGCCCTTCTTGCTGGGCCGAACTGATAACAGGGAGGAAAGGGAGAAGGAAACCACGATGGATTTCGTTAAAATAAGCAAAACTCAAATTGAAAGATTGCAAAAGAGAGCAAATGAGAGTTCGCCAAGGCCTAGAAATGATCGTGGTTATTCCCGTTATGAGAGCGTGACTGGTCACATATGGAGATGTGCAAGCAAGGCAAGGGAGCACAAAGAGAACCAACCTACCGTTCTTACTGTTATAGTTGACTCAAGGGGTCGCATGAAACCTCCTTTGCCAGAAGGGTACTTCGGGAATGCCAATTTGGATAGTGTTGCATGTAGCCTTGCGGGTGATTTGGTGTCGGAGCCTTTGGGGTATACGGCGAGTAGAATAAGGGAGGCGATTGAGAGGGTGAGCGATGAGTACGTGAGGTCGGGGATTGAGTTCTTGAAGAATCAGGAGAATATAAGAAGGTTTCATCAAGATCTTCACGAAGAACGGAGAGAGAAGGAGCCTTTCTTTGGGAACCCGAATTTGTCTGTGGTGAGTTGGTTGAGGTTACCTTTCTACGGCATTGATTTTGGGTGGGGGAAGGAGGTTCTAATGAGTCCAGCAACACATGACTTCGATGGAGATTTCGTGCTTCTTCCTGATCCTGATGAGGATGGCTCTATACTCGTTTGTATAGGTCTGCAAGTGCTGCATCTTGATGCATTTAAGAAGCATTTTTACGAGGACCTTGCATAA 1368 0.4766 MSVTVKACCTVRPIEATWCGRVALSEWDQTGKVTHVPFIYFYRLPQNCLSQYNTIASTLKDSLSRVLVPFYPLAGRLHWTNNGRLEIDCNATGVRFIEAESSSTLQHLADFSSCSEHHYLVPAVDYYSLPIHELPLVLVQLTKFKCGGICIGVTLSHAVVDGPSALHFVCEWARLSRGEPLRTVPFLDRKILRAGEPPLVPLTKCHVHTEFNDPPFLLGRTDNREEREKETTMDFVKISKTQIERLQKRANESSPRPRNDRGYSRYESVTGHIWRCASKAREHKENQPTVLTVIVDSRGRMKPPLPEGYFGNANLDSVACSLAGDLVSEPLGYTASRIREAIERVSDEYVRSGIEFLKNQENIRRFHQDLHEERREKEPFFGNPNLSVVSWLRLPFYGIDFGWGKEVLMSPATHDFDGDFVLLPDPDEDGSILVCIGLQVLHLDAFKKHFYEDLA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00620 455 Gene3D - 220 453 IPR023213 -
Vian1g00620 455 FunFam Tryptamine hydroxycinnamoyl transferase 219 451 - -
Vian1g00620 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 439 - -
Vian1g00620 455 Pfam Transferase family 1 452 - -
Vian1g00620 455 Gene3D - 1 212 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00620 Vian-Chr1 6075620 6076987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00620 1 452 Monolignol Biosynthesis Gene Families AT5G48930 36.062 1.26e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00620 K13065 - gmx:100777532 699.508