Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00603 ATGTCTTCGTGTTTGACCGGAGCTGGAGGAAGAACCTACGGATTCGATTTCGAATTTGTTAAATCTCCGTCTTCCTCCACCAGAACCTCACACACCTCTTCTTCGCCTTCTTCAACAATCTCCGAATCGAGCAATTCGGCTGCGCTCGCAATCTCCACCAAGAAACCCAGAACGCCGAGAAAGCGACCGAACCAAACCTACAATGAAGCAGCGGCACTTCTATCCACGGCCTACCCGAACCTCTTCTCTACAAAGAACCTCAAAACGCAGGGGAAATTCGCAAAGCCCGCATCGGAGAATTTCGATTTTGACTCTTCGGAGCTGTTTTTGCCGTTCAGGGTTTTGGACGGATCGTCTTCGTGTTTCCTTCTGGACCAACCGGGCCCCAAGCCCGTGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGCGTGTGGGAGCCCCGGGGAGATAAGCTCCGTAGTGAATTTCAATTACCTCGAATTGAACGACGATTGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGACGAGGAAATTGAAGAAGGAATCGATAGCATCATGGGGAGCAGGGTCCAAGAAATCTCCAACGACGCCGTCAATAACTTTCCCTGGATAATGCCTTTTGGCGGGAAATCGGACTTCCCCAGACCCCGTGTCAGCGCTCTCCGACACGTCGACAACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCATCAGATATCTCCCAAAATTAACACCAAGCCTCCTCCGGTGACCGCCGAGAAGAAGATGAAGAAGAAAAGGGTGACAGCGATTGCGGCGGCCGAGAAACCGGCCGTGGTGGAGTTGAAGAACGCGGAATTGCCCAAACCGAAACAAGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGGGCGCTTGGTCCGACCGTGGGACCCCGTTCGCGGACGATAGCCCCCTGGCCGACTTGCCGGAAACTGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTGGTGGGACAATGGCGGAGTGAGAGAAGCTAGCGTGCAGCGCTACAAAGAGAAGCGGCGAACGCGACTGTTCTCGAAGAAGATCAGATACCAGGTGAGGAAGGTCAACGCAGATCGACGGCCCAGAATGAAGGGGCGATTTGTTAGGAGGCTCAATTCTAGCTCAAATGCACACAGATGA 1179 0.5327 MSSCLTGAGGRTYGFDFEFVKSPSSSTRTSHTSSSPSSTISESSNSAALAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKFAKPASENFDFDSSELFLPFRVLDGSSSCFLLDQPGPKPVERPKVVSVQEKACGSPGEISSVVNFNYLELNDDCEESLDAESILDEEIEEGIDSIMGSRVQEISNDAVNNFPWIMPFGGKSDFPRPRVSALRHVDNGNWWNFPAVDIHQISPKINTKPPPVTAEKKMKKKRVTAIAAAEKPAVVELKNAELPKPKQGLMLKLNYDDVRGAWSDRGTPFADDSPLADLPETDVTARLSQIDLWWDNGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNSSSNAHR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00603 392 MobiDBLite consensus disorder prediction 22 64 - -
Vian1g00603 392 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 386 - -
Vian1g00603 392 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Vian1g00603 392 Pfam CCT motif 341 382 IPR010402 GO:0005515
Vian1g00603 392 MobiDBLite consensus disorder prediction 22 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00603 Vian-Chr1 5859269 5861723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00603 258 383 C2C2-CO-like Transcription Factor Family AT1G25440 40.789 1.56e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g00603 CCT 5.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00603 - - gmx:100810303 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00603 1 5859269 5861723 Vian1g00603 1 5859269 5861723 ECH