Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00599 ATGGAAAATATGGGTGGGGAGTACAACCATTTCTGGGACACCTTCTTCCAAAACCAAGAGCTTGATAGCTGGGCAATGGATGAGGCGGCGATGTCCGGGTACTATGATTCAAGCTCTCCGGACGGTGGTGCTTCATCGATGGCATCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTTAGAGCCGTGGTCCCCAACATCAGTAAGATGGACAAAGCTTCTATCATTAAGGATGCTATTGAATACATCCAGCACTTGCATGAGCAAGAGAAGAGAATCGAAGCAGAGATTTTGGATCTGGAATCTGGGAAGCTCAAGAACCCAACCTATGAATTTGATCACGACCTGCCTATTCTCCTCAGGTCTAAGAAGAAGAGAACGGAACAGCTATTTGATTCTGCCACTTCAAGAAATTCCCCAATTGAAGTAATCGAGCTGAGGGTTGCATACATGGGAGACAAGACGTTTGTGGTGAGCTTGACATGTAGTAAAAGGATAGACACAATGGTAAAACTGTGTCAGGTTTTCGAATCTTTAAAGCTGAAGATCATTGCAGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAGACAGTCTTCATTGAGGCTGATGAAGAAGAGAAAGATGTTTTTGCAGATAAAAATTCAGACAGCAATTTCAGCTCTGAATGGTCCTCATAG 708 0.435 MENMGGEYNHFWDTFFQNQELDSWAMDEAAMSGYYDSSSPDGGASSMASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRIEAEILDLESGKLKNPTYEFDHDLPILLRSKKKRTEQLFDSATSRNSPIEVIELRVAYMGDKTFVVSLTCSKRIDTMVKLCQVFESLKLKIIAANITSFSGTLLKTVFIEADEEEKDVFADKNSDSNFSSEWSS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00599 235 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
Vian1g00599 235 Gene3D - 44 112 IPR036638 GO:0046983
Vian1g00599 235 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 113 - -
Vian1g00599 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 109 IPR036638 GO:0046983
Vian1g00599 235 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 38 216 - -
Vian1g00599 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vian1g00599 235 SMART finulus 52 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00599 Vian-Chr1 5820445 5825314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00599 7 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 60.287 1.35e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g00599 HLH 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00599 - - gmx:100803916 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00599 1 5820445 5825314 Vian1g00599 1 5820445 5825314 ECH
Vian1g00599 1 5820445 5825314 Vian4g00273 4 2901897 2907850 PCT