Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00591 ATGTTTTGTTCAATGACGAGACGAATAATTCCTTTGGTGTTTCAGCAAGCGGCACTGGTGCTCAATGCTTCTCGCCGATTTCGGTACACCTTGGACTTAAAGAAAGAAGAAGAAAAGAAGAGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCTGCATATCGATTCAAGGAAGCTGGGCAATTGAATGGACTTGGAACTATAAAACCTCATTTGAACTCCACTGGAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGAGACACTACTACTCTGCGGGAATGTGAAGGGGTTGTAGGGTTATCAAATTTATTGAAAAGCAATTTAGAGAAGGGAATTCGAGGTGATGATGCTGACTTGTTAATACGGAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGTCTGGAAGAAATTTTTTGGATTTGACCTTGATTATTCTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATCCAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGAGAAACATTCATTTGGAGGTCATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAACCAGGTCCCCGCTGATGGAGTTTTGATCTCTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAAATTGTCGAAAAAAATTCTAACGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAATGGAACTATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGGCTTCTGATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTCTCGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTATCGTTCTGATAGTACTACTGGCCAGGTATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAAACCAAAGTTGGTGATGCTATTGATGGAGTGATCAAGATATTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGTTGCCTTTAGCCGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCGGATAAAGCTTTGGTGAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATCTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGATAACTCCTGATCATACACCAGACCAGTTGTCTGGTATGCTACGGTCTTTGCTGTTTGAAGGTGTTGTGCAGAACACTAATGGAAGTGTTTATGTCCCTGAGAGTGGTAATGATATTGAGATTTCTGGATCACCAACAGAAAGGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGCATTTTGATGATGTCAGATCACAATCATCAGTTGTCCATGTCTTCCCCTTTAATTCAGACAAAAAGCGAGGAGGAGTTGCAATACAGATGACCACTCCGCAGACAGACTCTGAAATCCATATACATTGGAAAGGTGCGGCTGAGATAGTCCTTGGATGCTGTACAGGGTATATTGATGTTAATGATCAACTGGTGGAGATGGATGAAGAGAAGATGTCATATTTTAAAAAGGTTATTGAACATATGGCTGCTGATAGTCTACGGTGTATTGCGATTGCATTTAGATCATTTGAAAGGGAGAATGTTCCAACTGGTGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTTTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAAACTGCAAAAGCAATAGCTGTGGAATGTGGAATTCTTGGTTCAGTCTCTGAAGCTACAGAGCCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGCACAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCCGCACTACACGAGGCCGATATTGGTCTTTCAATGGGTATACAAGGAACAGAAGTTGCTAAAGAGAGCTCCGATATCATTATTTTGGATGACAATTTTGCTTCGGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCTGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACAGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTGGCCTTGGCAACTGAACCACCAACTGATTCCCTAATGGGTCAGCTTCCAATGGGAAGACGTGACACTCCTGTTGCATTGAAGCTGGCAGGGATTTTAAATTTATGTGAACCAAGCCGCAAACAACTAACTGATGAATGCTAA 2700 0.4211 MFCSMTRRIIPLVFQQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQLNGLGTIKPHLNSTGEFSIGQEQLSSISRDRDTTTLRECEGVVGLSNLLKSNLEKGIRGDDADLLIRRNAFGSNNYPRKSGRNFLDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLISGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGNGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVIVLIVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKITPDHTPDQLSGMLRSLLFEGVVQNTNGSVYVPESGNDIEISGSPTERAILEWGIKLGMHFDDVRSQSSVVHVFPFNSDKKRGGVAIQMTTPQTDSEIHIHWKGAAEIVLGCCTGYIDVNDQLVEMDEEKMSYFKKVIEHMAADSLRCIAIAFRSFERENVPTGEELAHWSLPEDDLFLLAIIGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSVSEATEPIIIEGKRFRALTDEGRAQIVDSILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMGQLPMGRRDTPVALKLAGILNLCEPSRKQLTDEC 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00591 899 Gene3D - 435 793 IPR023214 -
Vian1g00591 899 Pfam Cation transporting ATPase, C-terminus 833 879 IPR006068 -
Vian1g00591 899 ProSitePatterns E1-E2 ATPases phosphorylation site. 440 446 IPR018303 -
Vian1g00591 899 Gene3D - 448 648 IPR023299 GO:0000166
Vian1g00591 899 NCBIfam calcium-translocating P-type ATPase, PMCA-type 97 875 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vian1g00591 899 CDD P-type_ATPase_Ca_PMCA-like 131 874 - -
Vian1g00591 899 Pfam E1-E2 ATPase 216 416 - -
Vian1g00591 899 NCBIfam HAD-IC family P-type ATPase 183 354 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g00591 899 NCBIfam HAD-IC family P-type ATPase 715 828 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g00591 899 NCBIfam HAD-IC family P-type ATPase 378 462 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g00591 899 FunFam Calcium-transporting ATPase 642 793 - -
Vian1g00591 899 Pfam haloacid dehalogenase-like hydrolase 638 762 - -
Vian1g00591 899 Pfam Cation transport ATPase (P-type) 494 574 - -
Vian1g00591 899 PANTHER CATION TRANSPORTING ATPASE 72 874 - -
Vian1g00591 899 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 445 645 IPR023299 GO:0000166
Vian1g00591 899 SFLD p-type atpase 420 800 IPR044492 -
Vian1g00591 899 SFLD Haloacid Dehalogenase 420 800 - -
Vian1g00591 899 Gene3D - 131 314 - -
Vian1g00591 899 FunFam Calcium-transporting ATPase 193 314 - -
Vian1g00591 899 SUPERFAMILY Calcium ATPase, transduction domain A 216 311 IPR008250 -
Vian1g00591 899 Pfam Ca2+-ATPase N terminal autoinhibitory domain 16 38 IPR024750 GO:0005516
Vian1g00591 899 PRINTS P-type cation-transporting ATPase superfamily signature 663 673 - -
Vian1g00591 899 PRINTS P-type cation-transporting ATPase superfamily signature 748 767 - -
Vian1g00591 899 PRINTS P-type cation-transporting ATPase superfamily signature 438 452 - -
Vian1g00591 899 PRINTS P-type cation-transporting ATPase superfamily signature 262 276 - -
Vian1g00591 899 PRINTS P-type cation-transporting ATPase superfamily signature 772 784 - -
Vian1g00591 899 PRINTS P-type cation-transporting ATPase superfamily signature 641 652 - -
Vian1g00591 899 PRINTS H+-transporting ATPase (proton pump) signature 748 764 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g00591 899 PRINTS H+-transporting ATPase (proton pump) signature 594 612 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g00591 899 PRINTS H+-transporting ATPase (proton pump) signature 780 805 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g00591 899 SUPERFAMILY HAD-like 436 853 IPR036412 -
Vian1g00591 899 Gene3D - 146 875 - -
Vian1g00591 899 FunFam Calcium-transporting ATPase 448 648 - -
Vian1g00591 899 Gene3D - 14 62 - -
Vian1g00591 899 FunFam Calcium-transporting ATPase 9 plasma membrane-type 292 462 - -
Vian1g00591 899 SUPERFAMILY Calcium ATPase, transmembrane domain M 108 877 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00591 Vian-Chr1 5680481 5690770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00591 14 874 Primary Pumps ATPases AT5G57110 71.149 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00591 K01537 - gmx:100790157 1424.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00591 1 5680481 5690770 Vian1g00591 1 5680481 5690770 ECH