Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00583 ATGGCAGTAGATCTGGCAGGTGTTGCCAAGATTAGGATGGAAGAACAGATAGCCATCCAAGAAGCAGCTTCCGCTGGATTGAAAAGTATGGAGCATCTCATTCGTGTTCTTTCCTCCCAAATCCCTTCCTCTTCTGCTTCTGCCTCTGCCTCTGCCTCCTCCTCTTCTTCCACACACCACCACCGTCTTAATCTCAACCACCTTGACTGCACCGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGCCGCGCACCTTCTCATTCCTCCCCCTCCCCCTCTCTTCCTTCTCCGCCGCAGCCACACGCTCAAAAACTCACTCTTCATTTTGCAAACCCCAAGGTCAAGTCAAATCCCAATCCCAACCCCAACCCCAACCCTTCTTTCACGGATTTGTCGGTTTCTCAATATTCCAAGACCAAAGACACCACCTTTAGCATATCTCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCTGTCACGGCAGACGGCAGCGTTTCCGACGGCAAGATCGGCCCCGCCATCCTCGCGTCCGGGAAGCCTCCTCTCTCCTCATCCCACCGTAAAAGGTGTCACGACGCCACCCTCTCGGCCGGGAAAACCTCATCCTCCGCCCACTGTCATTGCTCCAAGAGAAGGAAATCTCGTATGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATCGCCGATATCCCTGCGGATGAGTACTCGTGGAGAAAGTATGGTCAAAAACCCATCAAGGGGTCACCCTACCCACGAGGGTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCGGCCAGAAAGCACGTGGAGCGAGCCCAGGATGACCCTAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAGCCGCGTCTGCCGGAAGCTGGCGTGCCCGGCCCCGTGGCTTTCGGTGCTCAGGCTGTTTAA 990 0.5475 MAVDLAGVAKIRMEEQIAIQEAASAGLKSMEHLIRVLSSQIPSSSASASASASSSSSTHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHSSPSPSLPSPPQPHAQKLTLHFANPKVKSNPNPNPNPNPSFTDLSVSQYSKTKDTTFSISPPISTTTSSFMSSVTADGSVSDGKIGPAILASGKPPLSSSHRKRCHDATLSAGKTSSSAHCHCSKRRKSRMKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPEAGVPGPVAFGAQAV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00583 329 SUPERFAMILY WRKY DNA-binding domain 248 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g00583 329 SMART WRKY_cls 250 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00583 329 Pfam WRKY DNA -binding domain 252 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00583 329 ProSiteProfiles WRKY domain profile. 245 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00583 329 Pfam Plant zinc cluster domain 204 248 IPR018872 -
Vian1g00583 329 Gene3D WRKY domain 236 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g00583 329 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 311 IPR044810 GO:0003700
Vian1g00583 329 FunFam WRKY transcription factor 65 234 311 - -
Vian1g00583 329 MobiDBLite consensus disorder prediction 96 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00583 Vian-Chr1 5601578 5602793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00583 1 319 WRKY Transcription Factor Family AT2G24570 49.288 4.10e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g00583 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00583 - - var:108322692 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00583 1 5601578 5602793 Vian1g00583 1 5601578 5602793 ECH
Vian10g00564 10 5309795 5311141 Vian1g00583 1 5601578 5602793 PCT
Vian1g00583 1 5601578 5602793 Vian4g00286 4 3111240 3112825 PCT