Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00577 ATGGAAGACGCTGAAGAATGCATCACTGGGCTATGTTTGGGACTTGGAATGGGAGGGTATGTCCCCAAAAAAGGTAATCAGAAAGAGAACAGGCCCGTGGTAGACTTAGCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTAACTTGAATCATGATAAGGTAGAGAGCACTGATTCTGATAACAGCAACAACAACAACAACGGATGCAGAAAAAAACTCAGGCTTTCCAAGGACCAATCATCCATGCTTGAGAACAGCTTCAAACTGCATAGCACTCTTAATCCGGTCCAAAAACAAACACTGGCTGATCAATTGAATTTAAAGACTAGACAAGTCGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGACCGTGAGTGGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCATCGCCTCTGTGCATTCAACTATCCAAAACGGCAACTCTGACTATGTGCTCTTCGTGCGAGAAACTAGTAAAACTGAACGAAGGAAAGAACAATATAGAGTTAAAGGGTACAAATTGA 606 0.4224 MEDAEECITGLCLGLGMGGYVPKKGNQKENRPVVDLAFELCPKGEAINLNHDKVESTDSDNSNNNNNGCRKKLRLSKDQSSMLENSFKLHSTLNPVQKQTLADQLNLKTRQVEVWFQNRRARTKLKQTEVDREWLKKQCQNLSDENKRLKKELQELRALKVGPSPLCIQLSKTATLTMCSSCEKLVKLNEGKNNIELKGTN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00577 201 Pfam Homeodomain 70 124 IPR001356 GO:0003677
Vian1g00577 201 CDD homeodomain 70 127 IPR001356 GO:0003677
Vian1g00577 201 SMART HOX_1 68 130 IPR001356 GO:0003677
Vian1g00577 201 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Vian1g00577 201 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 188 - -
Vian1g00577 201 SMART halz 126 169 IPR003106 GO:0006355|GO:0043565
Vian1g00577 201 SUPERFAMILY Homeodomain-like 57 127 IPR009057 -
Vian1g00577 201 Coils Coil 118 159 - -
Vian1g00577 201 Gene3D - 74 124 - -
Vian1g00577 201 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00577 Vian-Chr1 5533102 5534275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00577 56 184 Homeobox Transcription Factor Family AT3G60390 65.116 2.59e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vian1g00577 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00577 K09338 - gmx:100812222 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00577 1 5533102 5534275 Vian4g00291 4 3170096 3171189 PCT