Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00566 ATGATTCCAGCCTATCGCCACTCTTCTGTGATTCCTCTGGATCTTAATGAAGATCAAAACCATGAGCTCTTCACTCCCACTTATCATGCTTACCCTTCTTTTTCTTATCTATCTTCATCATATCCCGTCCTCTTCAGCCCTCCAGATCAAGAAGATGGATCACACTCCTGGGAACCAACAAAGCACTTATCAGGTCATGAAGAGGCTGAGAAGATTAACCCTACCATGGGATCATGGGATCACTCGGTTGCACAAAGTGAGCTCAAGGTGACAGTTTGCAAGCAGAAAGAGAGGAGTGAAGATCACGAAGCAGCTGCTGAGGATGGTTCGGTGAAGTTGATGTCTTCAAAGATGAGAATGATGCAGAAGATGATGGGGTCCGATCAAACTGGTGCATATATAGAAGACAGCACTGTGAATAAGTTTGAAGATGAGAAGCAACCATTATCACCGCTTGGAACTGATAACAGCAGCAGCAACAACTGTTCAAACCACAGTAACAACACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCCTGTGGAATTCGACAGAGGAAGGCGAGACGAGCCATGGCAGCTGCAGCATCGGGAAATGGAACAGTGATTTTTGAAACTGAGAAGTCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGGCAAGAACTCAGGGTGCACCACAGATGAAAAAGAAGCGCAAGCATGGAGTTGGAGCAAAGCCATCTCAAAGCAGAAACAAGTTTGGTTTTGAGGATTTGACATTACGCCTAAGAAAGAGCTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTTCTTTTTGTGTCCCGGAGACCTGTGGGTTGTGCTCTTGATTTGGACTTTGTCTGCTTCAAAAAGTTTTTAACTTATGAGCAGCTTGCCTTCACTCTTCATACCATGCAAGGAAGAGTGGTATCAGAGTGCAGAGTGATCATCATTCTGTTTGAAGAAATGACAATGGGTGAGAGTCCCCCACCTGCACCTCCAACTGGGTTGCTTATGAAGCGCTGCAAGTTCATTTGGCGCCTTTTGCTGCTCTCTAACCTTGCTCTTGGAGCTTTTCTATTTGCAAGTGCAAAACGAAGAGATTCAGGGGAGATTACTAGAAGAACAGCACAAAAATCTCACAAGGGAAAAGCTAGTGTTGAAGTTCCTCCTGAACCCGTCACAAGTTCAATTGATTTAAATTACGATGATTGCATTTTGCCTGTCACGACACCTGAGCAAATGCAGGCTCCTATCCCTGAAGAACTACAACGTGAAATTTTCCAGTGGATGCTGGAAGAGAAAAGAAAACAGAAACCTAAGAACCCTGTAGAGAAAAAACAAATTGATGAAGAAAAGGCCATTCTTAAGCAGTTCCTGCGAGCAAAGTCAATACCAAAGTTTTAA 1506 0.4469 MIPAYRHSSVIPLDLNEDQNHELFTPTYHAYPSFSYLSSSYPVLFSPPDQEDGSHSWEPTKHLSGHEEAEKINPTMGSWDHSVAQSELKVTVCKQKERSEDHEAAAEDGSVKLMSSKMRMMQKMMGSDQTGAYIEDSTVNKFEDEKQPLSPLGTDNSSSNNCSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGTVIFETEKSVKGNKLQKKEKKARTQGAPQMKKKRKHGVGAKPSQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLLFVSRRPVGCALDLDFVCFKKFLTYEQLAFTLHTMQGRVVSECRVIIILFEEMTMGESPPPAPPTGLLMKRCKFIWRLLLLSNLALGAFLFASAKRRDSGEITRRTAQKSHKGKASVEVPPEPVTSSIDLNYDDCILPVTTPEQMQAPIPEELQREIFQWMLEEKRKQKPKNPVEKKQIDEEKAILKQFLRAKSIPKF 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00566 501 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 15 303 - -
Vian1g00566 501 Gene3D - 168 256 IPR013088 GO:0006355|GO:0008270
Vian1g00566 501 MobiDBLite consensus disorder prediction 229 243 - -
Vian1g00566 501 MobiDBLite consensus disorder prediction 404 423 - -
Vian1g00566 501 MobiDBLite consensus disorder prediction 54 68 - -
Vian1g00566 501 MobiDBLite consensus disorder prediction 47 68 - -
Vian1g00566 501 MobiDBLite consensus disorder prediction 244 258 - -
Vian1g00566 501 FunFam GATA transcription factor 21 167 257 - -
Vian1g00566 501 MobiDBLite consensus disorder prediction 404 419 - -
Vian1g00566 501 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Vian1g00566 501 MobiDBLite consensus disorder prediction 229 261 - -
Vian1g00566 501 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 207 - -
Vian1g00566 501 SMART GATA_3 167 218 IPR000679 GO:0006355|GO:0043565
Vian1g00566 501 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Vian1g00566 501 CDD ZnF_GATA 172 200 IPR000679 GO:0006355|GO:0043565
Vian1g00566 501 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00566 Vian-Chr1 5429560 5437399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00566 85 304 C2C2-Gata Transcription Factor Family AT4G26150 38.400 1.19e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian1g00566 GATA 7.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00566 - - gmx:100810698 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00566 1 5429560 5437399 Vian1g00566 1 5429560 5437399 ECH