Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00562 ATGGCTCCGAGAATCCTTCTATGCGGCGACGTTTTAGGTCGCCTCAGCCAACTCTTCAAGCGCGTCTCTTCAGTGAGCAAATCTGCAGGTCCATTCGATGCGCTCTTGTGCGTAGGCCAGTTCTTCCCGGACTCACCGGAGCAACTGGATGAATTCACCGCCTACATTGAAGGTGGATCACAGATTCCGCTTCCGACTTACTTCATCGGAGATTACGGCGTCGCCGCCCCTAAATTTCTCTTGCAAGCTTCCAAGGACTCCGCCAACCGCGGCTTCATGATGGACGGCTTCAAGGTTTGCCACAACTTATATTGGTTGAAAGGCAGTGGCAAATTCCCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCGTCTAGTGTTCAACAGTTTGGAACTTATACCGAAGATGACGTTGATGCTTTGCGAGCTATTGCAGAGGAACCAGAAATTATTGATCTGTTCTTGACATATCCTTCAATTGTTGTGCATTATCTCATTGGCATCACCAATGGAGCAGCTGCTTCGGACATTCCTGCTGGAGCCTCTGATGTTGTAGGCAGTGATTCAACCATATCGGAGTTAGTACAGGAGATCAAGCCACGTTATCACATTGCAGGCACAAAAGGTATGTACTATGCCCGTGAACCATATACCAATGTTGACGCTGTGCATATCACCCGTTTCATAGGGCTTGCATCTGTTGGAAATAGAAATAAACAGAAATTTATTCATGCAATCTCTCCCACACCTTCTTCGACCATGTCTTCAACTGAGATTGCTATGAAAACCACAAATACCACCTTATCACCTTACACATTTGTGGAGAAAAGAACACCTCCTATGGATTCCACGAAGAGATCCAGTGATTCTATCTCTGAGTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAACTGGACAAGCTGATAAGACGTGTTTCAAATTTGTCTCTTCTGGATCTTGTCCACGTGGAGAGAAGTGCCATTTTCGTCATGATACAGATGCAAGGGAGCAGTGTAAGAGAGGTGTTTGTTTAGATTTTTTGATTAAGGGAAAATGTGAAAGGGGCCCAGACTGCAATTTTAAGCACAACTTGCTGGATGAAGGTGACAGGGATCCTTCTAGGAGGTCCGGATCTGGCAGCTCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGAAGACACATTTAATCGTTAGCATTGGGGAGAATTATTACTTGGCACTGGCTAAAGGTCCACTTGTTGAGGACCATGCACTGATAATACCCGTTGAGCATGGGTTTAATACCTTATCTATGTCTTCTGAATCTGAAACTGAGCTCTCTAGGTTCCAGAACAGTCTCAAGAGTTACTGCAGGGGCCAAGAAAAGGAAGTGATATTTTTTGAGTGGGCCTCCTTGCGTCGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATGGTTGAAAAAGTGTTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCCAAGACATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGACTCAAATTGGTGGGGGTTCAGGATTGTTCTATGCTCAGGTTCCAGGAGGCAAAATTCTGCTGCATCATGTTGAAAAGAACGAGAAATTTCCTGTCCAGTTCGGCCGGGAGGTCATGGCTGGGTTGCTCAATATGGCAGATAATGCAGATTGGAGGAGTCACAGACATAGCAAAGATGAGGAAATGAAAATTGTTGAAAATTTCAAGAGTCGATTTCAAGAATATGATCCAAACTGCTAA 1821 0.4437 MAPRILLCGDVLGRLSQLFKRVSSVSKSAGPFDALLCVGQFFPDSPEQLDEFTAYIEGGSQIPLPTYFIGDYGVAAPKFLLQASKDSANRGFMMDGFKVCHNLYWLKGSGKFPLFGLSVAYLSGRKSSSVQQFGTYTEDDVDALRAIAEEPEIIDLFLTYPSIVVHYLIGITNGAAASDIPAGASDVVGSDSTISELVQEIKPRYHIAGTKGMYYAREPYTNVDAVHITRFIGLASVGNRNKQKFIHAISPTPSSTMSSTEIAMKTTNTTLSPYTFVEKRTPPMDSTKRSSDSISESQYWRYDVSQKRQKHETGQADKTCFKFVSSGSCPRGEKCHFRHDTDAREQCKRGVCLDFLIKGKCERGPDCNFKHNLLDEGDRDPSRRSGSGSSKECWFCLSSPNVKTHLIVSIGENYYLALAKGPLVEDHALIIPVEHGFNTLSMSSESETELSRFQNSLKSYCRGQEKEVIFFEWASLRRTHANLQAIPIPSSKAVMVEKVFNLAAQKLGFEFVAKTFDSISDGRKFLKTQIGGGSGLFYAQVPGGKILLHHVEKNEKFPVQFGREVMAGLLNMADNADWRSHRHSKDEEMKIVENFKSRFQEYDPNC 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00562 606 SUPERFAMILY HIT-like 391 460 IPR036265 -
Vian1g00562 606 CDD MPP_CWF19_N 6 237 - -
Vian1g00562 606 Pfam Protein similar to CwfJ C-terminus 2 526 603 IPR006767 -
Vian1g00562 606 SUPERFAMILY CCCH zinc finger 317 341 IPR036855 GO:0046872
Vian1g00562 606 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Vian1g00562 606 Pfam Protein similar to CwfJ C-terminus 1 389 500 IPR006768 -
Vian1g00562 606 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Vian1g00562 606 Gene3D - 303 373 - -
Vian1g00562 606 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 605 IPR040194 -
Vian1g00562 606 SMART c3hfinal6 348 373 IPR000571 GO:0046872
Vian1g00562 606 SMART c3hfinal6 316 341 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian1g00562 CwfJ_C_1 2.4e-35 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00562 K24939 - gmx:100782106 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00562 1 5372000 5376688 Vian1g00562 1 5372000 5376688 ECH