Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00554 ATGGATGCTGTTTTTTCCCTCTCTCAAGCTTCCAGAGCTCATTTTCTCCGTTCTCTCATCCAATATTTTGGCTGCACTTACGTTTCTCTTTGGCAACACTCACTTTTATCCAATCGTTTGTTCTTCCTTGATGGTTTCTACAATGCTCTCAACAACAAACCAACTTCTTCTCAAAGCCTTTTTCATCAGTATGGGGCTTTAACGTTTGATGTCAGTGATGAGTGTGTTCCAGGACTTGCTTTCAAGAATCAACTTCCCTACATACAACTCAAACTCTCTGATCTCCTACCACTCACATCCACCCAAATTCAAGCACAATTCTTTCAAGAAGCAGGGATTGAGATGGCTGTTTTCATGGGGTGCAAAGAGGGAGAAATCGAACTTGGCTTCTCCAACATTCCTGAAGCTGACATTGAGACAGCACTTAAGAATTTATTCCCAGAAGATTTCTATATGCGTTTCCAATCAATTGATCAGAATCCATATTCATGGTCATCCTCTTCTTTTATAAGATCATCTACAAATACCTTTAATCAATCAATCAATGTTCCGGGAACTTCCCACTCCAACTTCCCTGATGCCCTCGGTGTGGGTCCCACACAACCGATTTCTCACCAACCATTGTCTCAAGTCATTCCATTTCCAAGCCATTTACCGACACCAGAGGGTGAACATCAAGAAATAGTAAGAGCATTAATCCGAGTCCTGTCTTCAACTTCTCAGCAGCAGCTTTCCCATCAAGTTTTGCCTCATAATTCTGTAAAACACCCTGGAGCTGCTGATGTCGTGAGATATATACCAGATTCAAATATAAACCCACACATGGAGTCCAACTTTAGCAGGCGAAACCTGCAGAATACATCATTTCCATTGCTTAAGAACTTAAATTCAAAGAGAATGAGAGAACGCCATACTATTAAACCAACCCACCCCATTAGTTCCCAGAAGTACTATCACACGGTATCCGAAAGAAAACGTCGTGAAAAACTCAATGTGTGTTTTCAGGAACTCAGCGCACTTCTTCCTCTTGGAACAAAGAAAAACAAAAGGTGGGTTCTTACAGCAGCAAAGGAGACGATGAGATCTTTGATGGTTGAAATTGAAGAGCTTAAGATGAGAAATGAGCAGCTGATGAGAGTTTTGTCAGGCAAAGAAGTTGGTAGTAGTAGGGAGGAAGACAGAGGCAGGTCCTATAATGAAAGATTGAATGTTCGGGTTTTGCATGCATCAGAATCAAGTTCATCAGAAGAGCAAATGGTGAACTTGGAAGTGACGGTGAGAGAACAAAGCAGTGAAGTTAATGTATTGGTTCGAATATTGGAGTTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCCACGAACACAAACCTCCATATTACAGAAGGAGGGACAGCCATTAATGTATTAACCTTCAGGCTGAGGATTATTGAGGGTAGTGAATGGGACGAGGTTGGCTTCGAGGAAGCAGTAAGAAGAGTGGTTGCTGACATAACACATCGTGAATTCCACCCATAA 1518 0.4163 MDAVFSLSQASRAHFLRSLIQYFGCTYVSLWQHSLLSNRLFFLDGFYNALNNKPTSSQSLFHQYGALTFDVSDECVPGLAFKNQLPYIQLKLSDLLPLTSTQIQAQFFQEAGIEMAVFMGCKEGEIELGFSNIPEADIETALKNLFPEDFYMRFQSIDQNPYSWSSSSFIRSSTNTFNQSINVPGTSHSNFPDALGVGPTQPISHQPLSQVIPFPSHLPTPEGEHQEIVRALIRVLSSTSQQQLSHQVLPHNSVKHPGAADVVRYIPDSNINPHMESNFSRRNLQNTSFPLLKNLNSKRMRERHTIKPTHPISSQKYYHTVSERKRREKLNVCFQELSALLPLGTKKNKRWVLTAAKETMRSLMVEIEELKMRNEQLMRVLSGKEVGSSREEDRGRSYNERLNVRVLHASESSSSEEQMVNLEVTVREQSSEVNVLVRILEFLERVQNVTLISTNTNLHITEGGTAINVLTFRLRIIEGSEWDEVGFEEAVRRVVADITHREFHP 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00554 505 Pfam Helix-loop-helix DNA-binding domain 318 363 IPR011598 GO:0046983
Vian1g00554 505 SMART finulus 320 369 IPR011598 GO:0046983
Vian1g00554 505 Coils Coil 353 380 - -
Vian1g00554 505 Gene3D - 313 386 IPR036638 GO:0046983
Vian1g00554 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 380 IPR036638 GO:0046983
Vian1g00554 505 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 100 497 IPR044658 -
Vian1g00554 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00554 Vian-Chr1 5237210 5240011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00554 303 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 45.274 5.42e-35 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g00554 HLH 5.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00554 - - vum:124823621 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00554 1 5237210 5240011 Vian1g00554 1 5237210 5240011 ECH
Vian1g00554 1 5237210 5240011 Vian4g00306 4 3414326 3417761 PCT