Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00553 ATGAGAATTTTGACGGTGGCACTGTTAAGTGGATATGACTGGTTGGGAAGGAAAGTAGATAAAATGGAAAAAGATTTCAACAAGTGGATATGGCTGGTTGGGAAGGAAAGTAGACAAAATGGAAAAAGATTTCAACAAATTGCAAATGCAGCCTTCCAAACCAACAGCGCCTTCCCTGACGTTGGAGAAGATGATGGCCCTGGAGCTTTGCGCGACGGCAACAAGGATTGTCGGACTAACGATGAAGCTCTCAATTTGGATCATTCATGGCTGATGTGCGAGAATGAAGATTCAAATGGAGTACGAGATGCTGGCAGTGGCGGCTTGAGAAAATCCTGTGATGGCGGAGGCGCGGAGACGCGGCTTCACGGCGGCATGATGACTTTGGACGAGGTTTGTGGCAGCGGTGGTGTTAAGGAAGCAGGGATTGAGATGGCTGTCTTCATGGGGTGCAAAGAGGGAGAAATCGAACTTGGCTTCTCCAACATTCCTCAAGATGACATTGAGACAGCCCTTAAGAATTTATTCCCAGAAGATTTCTATATGCGTTTCCAATCAATTGATCAGAATCCATATTCATCGTCATCATCTTCTTTTATAATATCATCTACAAATACCTTTAATCAATCAATCAATGTTCCGGGAACTTCCCACTCCAACTTCCCTGATGTCCTCGGTGTGGCTTCCACACAACCGATTTCTCACCAACCATTGTCTCAAGTCATTCCATTTCCAAGCCATTTACCGACACCAGAGGGTGAACATCAAGAAATGGTAAGAGCATTAATCCGAGTCCTGTCTTCAACTTCTCAGCAGCAGCTTTCCCATCAAGTTTTGCCTCATAATTCTGTAAAACACCCTGGAGCTGCCGATGTCGTGAGATATATACCAGATATGACAAACCCAAATATAGAACCCCACACAGATTTCAATTTTCGCAGGCAAAACCTGAAGAATACATCACTAGTGAGAGAACGCAATAGTACTGTTCAAGCAACCGATCACATCAGTACCCTGCAGCATCACTTTCGTATGATATCGGAGAGAAGAAGGCGTGAAATACTCAAAGTGAGTTTTGAGGCACTTAGAGCAATTCTTCCTCCGGAAACTAAGAAAAGTAAAGCGATGATCCTGACAACAGCAAAGGAGAGAATAATATCTTTGATGGCTGACATTGAAAAGCTTAACATGAGAAAGCAGCAGCTTAGGAAAGATTTGTCAGGTGTTATGAGTGAAGAAAACAAAGGTAGGACCCCTGATGAAAGCTTGAATGTTCGAGTTTGGCATGTACCAGAATCAAGTTCGTCAGAAGAGAAAATGGTGGACTTAGAAGTGACAGATAACAAATGGGATGAAAGTGAGTTCGAGGAAGCAATTAGAAAGACTTGTATCTGA 1395 0.433 MRILTVALLSGYDWLGRKVDKMEKDFNKWIWLVGKESRQNGKRFQQIANAAFQTNSAFPDVGEDDGPGALRDGNKDCRTNDEALNLDHSWLMCENEDSNGVRDAGSGGLRKSCDGGGAETRLHGGMMTLDEVCGSGGVKEAGIEMAVFMGCKEGEIELGFSNIPQDDIETALKNLFPEDFYMRFQSIDQNPYSSSSSSFIISSTNTFNQSINVPGTSHSNFPDVLGVASTQPISHQPLSQVIPFPSHLPTPEGEHQEMVRALIRVLSSTSQQQLSHQVLPHNSVKHPGAADVVRYIPDMTNPNIEPHTDFNFRRQNLKNTSLVRERNSTVQATDHISTLQHHFRMISERRRREILKVSFEALRAILPPETKKSKAMILTTAKERIISLMADIEKLNMRKQQLRKDLSGVMSEENKGRTPDESLNVRVWHVPESSSSEEKMVDLEVTDNKWDESEFEEAIRKTCI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00553 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 407 IPR036638 GO:0046983
Vian1g00553 464 Gene3D - 339 413 IPR036638 GO:0046983
Vian1g00553 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Vian1g00553 464 Coils Coil 378 412 - -
Vian1g00553 464 SMART finulus 345 394 IPR011598 GO:0046983
Vian1g00553 464 Pfam Helix-loop-helix DNA-binding domain 346 388 IPR011598 GO:0046983
Vian1g00553 464 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 173 445 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00553 Vian-Chr1 5225369 5233149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00553 139 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 30.812 1.54e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g00553 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00553 - - vra:106766501 505.368