Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00550 ATGTTCGACGACAGCGAAAGCCATCACCACCACGACGTTTTCAGCGAGAGCAAGGACTCCGGAGTGACGGAAGAAGCAACGGCGGTTCACGTCAAAGAAGAGATGGATGACGGTGCCTTTAACGGTTTCATGGATAACAACCCGAAACCGATGGAAGGCTTGCATGAGATGGGTCCCCCTCCGTTCCTCAAGAAGACCTTTGATATGGTGGAGGACCCTAACACTGACCCCGTTGTGTCATGGAGTCAAACTCGCAACAGTTTCGTAGTTTGGGACTCTCATCAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGCTTCAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAGGCATTTGCTGAAGAACATTAGGAGGAGGGGTAAGTACAACAGACTGCATCAGGGAGCTTTCAATATGATGAAGCCAGGCTTGGAGGCTGAAGTGGAGAAACTTAAGAAGGACCAGAACATTTTGAAGGTGGAAATTCTGAAACTGAGGCAGCAACAGGAGAATTCGCATGTTCAGCTCACTAATGCTCAGGAGAGAGTTCGGTGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACTAGAATGGCTAGAAGACCCGCGTTTGTTGAGCAGTTAATCCAAAAGATTAGGAGGAAAAGAGAGTTTGATGCTAACGACATGGTTAAGAGGCCTAGATTGATGGTGAACCCCTGCTATGTACCCTTCCCAAAGACCACGGAGACAACCCCTGATGTTGATTACAGACATCAAAGTCATAAACAATTCGCTTCAATGCAATCCGAGCTCGACGGATTTCTGTCTGAAACTGTGGACATCAACAAGATGGAGCACCCAACTCCCTCTCCCTTGGAAGATGAATTGTGTAAACCTGTGCAAGGGTCAAGGGCCCATGGTTGTTCCAGCGCAAATGCGCCAGATGCTTCTTCTGCTTATCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTGTAGTTGATGAAGAACTAGATGTGAATGACTCTAATATCTATCTTGAATTAGAGGATTTGATCACTAAGCCATCGGATTGGTCTCTTGGATCTGCTAGTGGATTGGTGGAACAAAGTAGTTGA 1182 0.4628 MFDDSESHHHHDVFSESKDSGVTEEATAVHVKEEMDDGAFNGFMDNNPKPMEGLHEMGPPPFLKKTFDMVEDPNTDPVVSWSQTRNSFVVWDSHQFSKTLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKRHLLKNIRRRGKYNRLHQGAFNMMKPGLEAEVEKLKKDQNILKVEILKLRQQQENSHVQLTNAQERVRCAEMKQYQMMFFLTRMARRPAFVEQLIQKIRRKREFDANDMVKRPRLMVNPCYVPFPKTTETTPDVDYRHQSHKQFASMQSELDGFLSETVDINKMEHPTPSPLEDELCKPVQGSRAHGCSSANAPDASSAYHVMSEKLMRENSVVDEELDVNDSNIYLELEDLITKPSDWSLGSASGLVEQSS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00550 393 FunFam Heat shock transcription factor 1 55 152 - -
Vian1g00550 393 Gene3D - 55 152 IPR036388 -
Vian1g00550 393 ProSitePatterns HSF-type DNA-binding domain signature. 101 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00550 393 Pfam HSF-type DNA-binding 62 151 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00550 393 Coils Coil 173 193 - -
Vian1g00550 393 PRINTS Heat shock factor (HSF) domain signature 113 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00550 393 PRINTS Heat shock factor (HSF) domain signature 100 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00550 393 PRINTS Heat shock factor (HSF) domain signature 62 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00550 393 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 48 278 IPR027725 -
Vian1g00550 393 SMART hsfneu3 58 151 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00550 393 SUPERFAMILY "Winged helix" DNA-binding domain 58 151 IPR036390 -
Vian1g00550 393 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00550 Vian-Chr1 5205275 5206925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00550 48 391 HSF AT2G26150 41.595 1.41e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian1g00550 HSF_DNA-bind 1.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00550 K09419 - gmx:100818430 654.44