Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00549 ATGGGAGAACAACTGCCGCCACTCAAAGCAGAGATGTTTGACGACAGCGAAAGTCATCGCTACGACGACGTTTTCAGCGACAGCAAGGACTCCGGACTGACTGAAGAGCCAACGGCGGTTCACATCAAAGAAGAGCTGGATGACGGCGCCGTTAACGGTTTCATGGATAAGATGCCGAAACCGATGGAAGGCTTGCACGAGATGGGGCCCCCACCGTTCCTGAAGAAGACCTTCGATATGGTGGAGGACCCTAAGACTGACCCCATTGTGTCATGGAGTCAAACTCGCGATAGTTTCGTCGTTTGGGACTCCCATGAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGCTTCAGGAAGGTTGATTCAGACCGCTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAGGCATTTGTTAAAGAACATAAGGAGGAGGGGTAAGTACAACAGACTGCATCAGGGAGCTTTCAATATGATGAAGCCAGGCGTGGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAACATTTTGAAGGTGGAAATTCTGAAACTGAGGCAGCAGCAGGAGAATTCACATGTTCAGCTCACTAATGCTCAGGAGAGAGTTCGGCATGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACAAGAATGGCTAGAAGGCCCGCGTTTGTTGAGCAGTTAATCCAAAAGGTTAGGAGGAAAAGAGAGCTCGATGGTAACGACATGGTTAAGAGGCCTAGATTAATGGGAAACCCCTGCTATGTACCCTTCCCAAAGACCATGGAGACAACCCCTGATGTTGATTATAGACCCCAAAATCATAAACAATTCCCTTCTATGCAAACCGAGCTCGGTGGATTTCTGTCTGAAACTGTGAACACCAGCAAGATGGAGCACCCAACTCCCACTCCCTTGGAAGATGAATTGTGTAACCCTGTGCAAGGGTCAAGGGCCAATGGTTGTTCTAGCGCAAATGCGCCAGATGCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTGTAGTTGATGAAGAACTAGATGTGAATGACTCTAATATCTATCTTGAATTAGAGGATTTGATCACTAAGCCGTCGGATTGGTCTCTTGGATCTGCAAATGGATTGGTGGAACAAACTAGTTGA 1215 0.4724 MGEQLPPLKAEMFDDSESHRYDDVFSDSKDSGLTEEPTAVHIKEELDDGAVNGFMDKMPKPMEGLHEMGPPPFLKKTFDMVEDPKTDPIVSWSQTRDSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKRHLLKNIRRRGKYNRLHQGAFNMMKPGVEAEVEKLKKDQNILKVEILKLRQQQENSHVQLTNAQERVRHAEMKQYQMMFFLTRMARRPAFVEQLIQKVRRKRELDGNDMVKRPRLMGNPCYVPFPKTMETTPDVDYRPQNHKQFPSMQTELGGFLSETVNTSKMEHPTPTPLEDELCNPVQGSRANGCSSANAPDASSAYHVMSEKLMRENSVVDEELDVNDSNIYLELEDLITKPSDWSLGSANGLVEQTS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00549 404 SMART hsfneu3 69 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00549 404 Pfam HSF-type DNA-binding 73 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00549 404 MobiDBLite consensus disorder prediction 10 34 - -
Vian1g00549 404 Coils Coil 184 204 - -
Vian1g00549 404 SUPERFAMILY "Winged helix" DNA-binding domain 69 162 IPR036390 -
Vian1g00549 404 ProSitePatterns HSF-type DNA-binding domain signature. 112 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00549 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 59 289 IPR027725 -
Vian1g00549 404 MobiDBLite consensus disorder prediction 1 34 - -
Vian1g00549 404 Gene3D - 66 163 IPR036388 -
Vian1g00549 404 FunFam Heat shock transcription factor 1 66 163 - -
Vian1g00549 404 PRINTS Heat shock factor (HSF) domain signature 73 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00549 404 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g00549 404 PRINTS Heat shock factor (HSF) domain signature 124 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00549 Vian-Chr1 5199050 5200685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00549 59 402 HSF AT2G26150 41.595 7.63e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian1g00549 HSF_DNA-bind 3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00549 K09419 - gmx:100818430 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00549 1 5199050 5200685 Vian1g00549 1 5199050 5200685 ECH