Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00544 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACAAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATCCTTCAGGGAGGAACTGGAATCCCAAATGTCAGATGGTTTGGAGTCGAGGGAGATTACAATGTTTTGGTGATGGATCTGCTGGGACCTAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTATCACTGAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCATTTCTGCATCGAGATATCAAACCAGATAACTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGAGATAGTTCAACACATCAACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTTGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACAAAGAAACAGAAGTATGAAAAAATCAGTGAAAAGAAGGTTTCTACCTCGATTGAGGCCCTGTGTCGTGGCTATCCAACGGAATTTGCATCTTACTTTCATTACTGCCGATCATTAAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTTCGGGACCTTTTTATACGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCACAGTTAGCCACTCCTCCAACACGAGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCCCCAGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTGCTGTGGTTTCAGTGGATTCCTCAAGGCGCAGAATGTCAGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCGAGGCGGGTTGCTGTTTCTGGTAGCCGTGATGCATTTGTTGGTACTGAGTCGGATATCCGTACTCGCACAGCTGAAGCTAGCTCTGGAGTAGCACACAGAGGTTTGAGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTTGTATCATCCGGGAGAAACGCTTCTCATGTGAAAAATTATGACTCTGTACTACTCAGGGGCATGGAAGGTTTGCAGTTAGAGAATGATGAGAGGACCCATTATTAA 1368 0.4298 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPAVVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRVAVSGSRDAFVGTESDIRTRTAEASSGVAHRGLSGQRSSPIGSSDPKRVVSSGRNASHVKNYDSVLLRGMEGLQLENDERTHY 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00544 455 FunFam Putative Casein kinase I 1 85 - -
Vian1g00544 455 CDD STKc_CK1_delta_epsilon 8 282 - -
Vian1g00544 455 FunFam Casein kinase I isoform delta-like 1 308 - -
Vian1g00544 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vian1g00544 455 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00544 455 MobiDBLite consensus disorder prediction 403 428 - -
Vian1g00544 455 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Vian1g00544 455 MobiDBLite consensus disorder prediction 303 322 - -
Vian1g00544 455 PANTHER CASEIN KINASE-RELATED 9 386 - -
Vian1g00544 455 MobiDBLite consensus disorder prediction 386 428 - -
Vian1g00544 455 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vian1g00544 455 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vian1g00544 455 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00544 455 MobiDBLite consensus disorder prediction 303 346 - -
Vian1g00544 455 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00544 Vian-Chr1 5156113 5160783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00544 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.24e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vian1g00544 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00544 K02218 - gmx:100811567 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00544 1 5156113 5160783 Vian1g00544 1 5156113 5160783 ECH
Vian1g00544 1 5156113 5160783 Vian4g00315 4 3491165 3498683 PCT