Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00541 ATGAGAAGCCGTGACCACACTGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGATCTGGTTCTTCCCGTGTCTTGATTACTACTGATCTTTTGGCCCGTGGTATCGATGTCCAACAAGTGTCACTAGTTATAAATTATGATCTCCCTACACAGCCTGAGAACTATCTGCATCGTATTGGTCGTAGTGGAAGGTTTGGCAGGAAGGGTGTGGCTATCAACTGTATCACAAAGGATGACGATAAAATGCTGTTTGACATCCAGAAGTTTTATAACGTGGTTGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTAA 348 0.4425 MRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINCITKDDDKMLFDIQKFYNVVVEELPSNVAELL 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00541 115 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 96 - -
Vian1g00541 115 SMART helicmild6 1 76 IPR001650 -
Vian1g00541 115 CDD SF2_C_DEAD 1 83 - -
Vian1g00541 115 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 115 IPR001650 -
Vian1g00541 115 Pfam Helicase conserved C-terminal domain 6 76 IPR001650 -
Vian1g00541 115 Gene3D - 1 114 IPR027417 -
Vian1g00541 115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 111 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00541 Vian-Chr1 5128312 5128659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00541 1 115 Eukaryotic Initiation Factors Gene Family AT1G72730 90.435 3.85e-72 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00541 K03257 - gmx:100788218 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00541 1 5128312 5128659 Vian1g00541 1 5128312 5128659 ECH
Vian1g00541 1 5128312 5128659 Vian4g00317 4 3520440 3522852 PCT