Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00538 ATGGAATCGAAGCTTATGCTTTTGGCATTTAGCTGCAAAGTGTCCATTCTATCAAGATCCCAACTGACATCAGATTTCTATAGCTCATCATGTCCTAACCTTTCAAAAATAGTAAGGAGAGAGGTTCAAAAAGCTCTCATGAATGAGATGCGAATGGCTGCTTCTTTGCTTCGCCTTCACTTTCACGATTGCTTTGTCAACGGCTGTGATGGATCAATACTACTAGATGGTGGTGATGATGCAGAGAAGTCTGCTATTCCTAATCTGAACTCTGTTAGAGGATATGAGGTTGTAGACACAATCAAAAGTTCAGTGGAGAGTGCATGCAATGGGGTCGTCTCCTGTGCAGATATATTAGCCATCGCTGCCAGAGATTCTGTTCTCCTAGTTTTGCTAGGACGAAGAGATGGCACGTTATCAAACGGAACACTGGCAAATAGTGCTCTTCCTGCGCCATTTGATCCACTGGATACCATCATTGCAAAGTTTACTGATGTAGGCCTTAATCTCACAGATGTTGTTTCTTTATCAGGAACAGGTGCACCAGACACCACATTAGACACTGCCATGCTCTCTGACCTGCAAAGTTTGTGTCAAAATGGAGATGGAAACGCAACTGCAGTTCTTGATAGAAACTCATCAGATCTATTTGACAACCACTACTTCAAGAACTTGGTCAGTGGAAAGGGGCTTCTCAGTTCTGACCAGATTCTATTTTCTAGTGATGAGGCTAATTCAACCTCTAAACCTTTGGTGGAAAGCTATATCAACAATAGTGGCCTCTTCTTCGGGGACTTTGTCAATTCTATGATCAAAATGGGGAACATAAATCCAAAGACTGGTTCCAATGGAGAGATTAGGAAGAACTGCAGAGTGATAAATTCCTAG 888 0.4223 MESKLMLLAFSCKVSILSRSQLTSDFYSSSCPNLSKIVRREVQKALMNEMRMAASLLRLHFHDCFVNGCDGSILLDGGDDAEKSAIPNLNSVRGYEVVDTIKSSVESACNGVVSCADILAIAARDSVLLVLLGRRDGTLSNGTLANSALPAPFDPLDTIIAKFTDVGLNLTDVVSLSGTGAPDTTLDTAMLSDLQSLCQNGDGNATAVLDRNSSDLFDNHYFKNLVSGKGLLSSDQILFSSDEANSTSKPLVESYINNSGLFFGDFVNSMIKMGNINPKTGSNGEIRKNCRVINS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00538 295 Gene3D - 275 294 - -
Vian1g00538 295 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Vian1g00538 295 Pfam Peroxidase 38 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PRINTS Plant peroxidase signature 268 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PRINTS Plant peroxidase signature 224 241 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 FunFam Peroxidase 25 154 - -
Vian1g00538 295 Gene3D Peroxidase, domain 2 150 179 - -
Vian1g00538 295 Gene3D Peroxidase, domain 2 180 274 - -
Vian1g00538 295 SUPERFAMILY Heme-dependent peroxidases 21 294 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 Gene3D - 26 149 - -
Vian1g00538 295 PRINTS Haem peroxidase superfamily signature 210 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 PANTHER PEROXIDASE 72-RELATED 19 292 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 ProSiteProfiles Plant heme peroxidase family profile. 21 294 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian1g00538 295 CDD secretory_peroxidase 21 293 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00538 Vian-Chr1 5102449 5107627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00538 1 294 Peroxidase AT5G19890 56.481 1.05e-118 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00538 K00430 - gmx:100787073 474.552