Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00537 ATGTCCACACCACCGTTGCTGAGATCGGTTGCCGTCGCTGTGAGCGGCGGCTCCAGCAAGGGTAGCCGGCGAGCCGTGCAGTGGGCGGTGGATAATCTGGTCCCTCAAGCCGACAGGTTCATCTTAGTTCACGTTATCCCTCCAATCACCTCAATTGTCACACCAACTGAAGAGTATATTCCTGTTTCGGAAGCAGACGCCGATGTTTTTGCAGCTTGTGTAGATGATGTGAAGCAAAAATCTGAACAAATCTTCGTCCCGTTCAAGAAACTCTGCGGCTCAAACACTATGGAAACAGTACTGCTAGAAGATGACAATGTGGCAGAAGCACTTCTTAGCTTTATTTCGGAGTCCGGGGTCCAAACATTAGTGCTGGGTTCTGACTCCTCAAATTTTATAACAAGTTTTTCTTCTTCCAGGAAGCTAAAAGGACCTGGAATACCAACTACCAGCCTAAGATGTGCTCCAGACAGTTGTGATGTGTATGTTGTAGCTAGAGACAGAATTGTTTCGAAGTTGGCCGATCTGTCATATTCACATTCTCGTGAGGCTAGCCCAAGTTACTTCATGTCTACTGAAGTAAATAAAGTAGACAATGACGCTGGCATTGACAGAGAAATGTCGGGAATCAGTTCATCCACATCAGAGTCTAAATTCCTAAAGAATTTCAGATTTTTATCAATATCCGACCATAGCTACATTGGTCTGCAAACATTTAGTCGCAGGGATTCTTTTGAAAATTCTAGCAAAAGTGATAATCCAGAAAACTGTGGAAATGATATTGAAATGATTAGCCTCCACTCTTTTGATTCCATTGCTTCTGCACAACGTAAACAGTTAGCCATGCAAGAAGAAGTAGAACGGCTGCAACTGGAGTTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGAAGAGCTGGTTCAAGCTCAAAACCAGGCCCTCATACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTGAATGCTTCCCTAAAAAGAGAGGAGGTTTTGAGAAAGATTGCTTCTGAAGAGAAAACTAAGTATTTAAAAGTCATGAAGGAACTTGAGGAGGCAAAAAATAAGTTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAACAGAGAATTGTTGATACATTACTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGACATCAAGATAGCCACAAAATTCTTTTCTGAGGACTTGATGATTGGTGAAGGAGGATATGGCAAAGTTTACAAGTGTGATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTGCATCATCCTAATATGGTTTTGTTACTTGGAGCCTGTCCTGAGAATGGTTGCCTAGTTTATGAATACCTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAACAAAAATAGAAAACCATCAATTCCATGGTTTTTTCGATTTCGCATAGTTTTTGAGATGGCCTGTGGGCTTTCATTCTTGCATAATTCGAAGCCAGAACCGATTGTACACCGAGATATAAAACCTGCCAACATTTTGTTAGACAGAAATTATGTGAGCAAAATTTCTGATGTTGGGCTGGCTAAACTCCTTGCAGAAGTTGCTCCTGACAATATTACAGAGTATCGAGAATCAGTCCTTGCCGGTACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTCCGACCAAAATCAGATATATATGCATTTGGAGTTATAACTCTCCAATTAATAACTGGTCGCCATGCACGTGGACTCATTATGATTGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGACTTTTTAGATACATCAGCTGGAGATTGGCCATTGGATGAGACAATGGAATTGGCTCAAGTTGCCCTTAAATGCACAGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAATTCTTCCACTACTCGAAAGATTTTCTAATGCGGCAAATGCCAGTGCAAGGATAGGAAGAAATAGTGTAAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAGACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCGAACCATACTCTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGTCACCTTTTGA 2304 0.4149 MSTPPLLRSVAVAVSGGSSKGSRRAVQWAVDNLVPQADRFILVHVIPPITSIVTPTEEYIPVSEADADVFAACVDDVKQKSEQIFVPFKKLCGSNTMETVLLEDDNVAEALLSFISESGVQTLVLGSDSSNFITSFSSSRKLKGPGIPTTSLRCAPDSCDVYVVARDRIVSKLADLSYSHSREASPSYFMSTEVNKVDNDAGIDREMSGISSSTSESKFLKNFRFLSISDHSYIGLQTFSRRDSFENSSKSDNPENCGNDIEMISLHSFDSIASAQRKQLAMQEEVERLQLELQNTIAMYKQVCEELVQAQNQALILSSESLEETKRVNASLKREEVLRKIASEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLKESIEKQRIVDTLLSNDRRYRKYTMDDIKIATKFFSEDLMIGEGGYGKVYKCDLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNKNRKPSIPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPANILLDRNYVSKISDVGLAKLLAEVAPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDIYAFGVITLQLITGRHARGLIMIVEDAIRNGSFRDFLDTSAGDWPLDETMELAQVALKCTALRCRDRPELDTEILPLLERFSNAANASARIGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWLSRHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00537 767 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 135 - -
Vian1g00537 767 Pfam Protein tyrosine and serine/threonine kinase 418 669 IPR001245 GO:0004672|GO:0006468
Vian1g00537 767 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 385 485 - -
Vian1g00537 767 ProSiteProfiles Protein kinase domain profile. 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00537 767 SMART Ubox_2 699 761 IPR003613 GO:0004842|GO:0016567
Vian1g00537 767 Gene3D HUPs 7 164 IPR014729 -
Vian1g00537 767 SUPERFAMILY Protein kinase-like (PK-like) 396 668 IPR011009 -
Vian1g00537 767 ProSiteProfiles U-box domain profile. 695 767 IPR003613 GO:0004842|GO:0016567
Vian1g00537 767 CDD STK_N 9 166 - -
Vian1g00537 767 SUPERFAMILY RING/U-box 690 762 - -
Vian1g00537 767 ProSitePatterns Protein kinases ATP-binding region signature. 419 440 IPR017441 GO:0005524
Vian1g00537 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 765 IPR013083 -
Vian1g00537 767 Gene3D Phosphorylase Kinase; domain 1 392 485 - -
Vian1g00537 767 PANTHER OS02G0152300 PROTEIN 10 760 - -
Vian1g00537 767 Pfam U-box domain 697 762 IPR003613 GO:0004842|GO:0016567
Vian1g00537 767 Coils Coil 272 313 - -
Vian1g00537 767 SMART serkin_6 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00537 767 CDD RING-Ubox_WDSUB1-like 697 751 - -
Vian1g00537 767 Coils Coil 339 385 - -
Vian1g00537 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Vian1g00537 767 Gene3D Transferase(Phosphotransferase) domain 1 486 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00537 Vian-Chr1 5094137 5099109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00537 5 763 Plant U-box Gene Family AT5G57035 52.308 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vian1g00537 PK_Tyr_Ser-Thr 9.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00537 - - vun:114178082 1417.14