Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00532 ATGGAGGAAATATCTTCAAGTGTTGCAGTACCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAAGAGTCTGCAGTGACAACTCACGTGGAGATAACTGGGCTGAAGCTTATGGCAAATACAGCAGCGGCAGCTTTGATGTTAAATCCTGCAGTGGAGTGTTGTCAGTCATATTCTGTTGGAAGTGAAAGCCATGCAGATGTAAGTCTGCAGCACCAGATCACGGTATCTGCGGAGGTAAAAGAGAATCAAGTTGGGGATGCCCTTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTTTTGAATGAAACCCATCATAAGGCTATAAAGGAAGATGAAGTAATGTTAGCTGTGGATTTTCACTGTCTTCATAGTTCAAGCTCTCAGTCTGTGGCTAATGGCCAAAGTGATCCTTGTAGGGAGGAAGCGGTGCCGTTGAAGACTAGTTATTCTGAAATAGAATCACCAATCATCATGAATGTTGATGATGATGTTCATGGCAAGTCTGGAGTAAACGAACCGTGTTCATCGATGAAGTCAGTGGAGAACACAGTTTCTGTTGCAATGGATATTACTAGTGAGGATCAAAGTGGATCAGATGAGTCTGATCCTAAATCATCTACTGTGCTTCTTGACCAGTTGTCTGGGGAGAATAAAGCATGGAGAACGAGCAACAAAAATGCTTTGGAATTGAATAGTGGCCCTCTGTGGGGTTATTCATCAATTTGTGGAATGAGACCGGAGATGGAAGATGTTATTTCTGTTCAGCCTCAACTTTTTCAAGTTCCTTCACAGATGCTGATGAATGACCACGTAAATGAGAACGAAAAACAGACACTAGCCCACTTTTTCGCCGTCTACGATGGACATGGGGGCCTTCAGGTTGCTAACTACTGCCAGGAACGTCTTCATTCAGTATTGATTGAGGAGATTGAGGCTGCACAATCAAGTTTGGCTGAAACAAATGGGAGAGATGATTGGCAGGACCATTGGAAGAAAGCATTCATCAATTGTTTTCAGAGAGTAGATGATGAGGTTGGAGGAACTGGTGCAAGTAATAATGGAAACAACAGTGGTGGATCTGAGTCTAGTATTGAACCTGTTGCTGCTGAGACTGCTGGTTCCACCGCAGTTGTCGCTATTTTAAGTCAAATCCTCATAATAGTTGCAAATTGTGGAGATTCAAGAACTGTCTTGTACCGTGGAAAAGAGGCCATGCCACTGTCTTCTGACCACAAACCAAATAGAGAGGACGAGCGGGCAAGGATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGGGATAGATATCTTAAACCATGGATAATTCCAGAACCTGAAGTGAATATTGTGCGTAGAGAGAAAAATGACGAATGTCTTATTCTAGCAAGTGATGGTTTGTGGGATGTAATGACAAATGAAGAAGCCTGCGAGGTTGCTAGGAAGAGAATCCTTCTTTGGCACAAAAAGTTTGGTGAAAACGGAGCAACAGGACATGGCGAAGGAGCTGATCCTGCTGCTCAGTCTGCTGCAGAGTATCTAACAAAGCTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTCATAGACTTAAAGGCTCAAAGAAGAATTAAGAGGAAGCCTTAA 1686 0.4294 MEEISSSVAVPFTLGVGNLIQKESAVTTHVEITGLKLMANTAAAALMLNPAVECCQSYSVGSESHADVSLQHQITVSAEVKENQVGDALVSEMVIECESNWVLNETHHKAIKEDEVMLAVDFHCLHSSSSQSVANGQSDPCREEAVPLKTSYSEIESPIIMNVDDDVHGKSGVNEPCSSMKSVENTVSVAMDITSEDQSGSDESDPKSSTVLLDQLSGENKAWRTSNKNALELNSGPLWGYSSICGMRPEMEDVISVQPQLFQVPSQMLMNDHVNENEKQTLAHFFAVYDGHGGLQVANYCQERLHSVLIEEIEAAQSSLAETNGRDDWQDHWKKAFINCFQRVDDEVGGTGASNNGNNSGGSESSIEPVAAETAGSTAVVAILSQILIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVRREKNDECLILASDGLWDVMTNEEACEVARKRILLWHKKFGENGATGHGEGADPAAQSAAEYLTKLAIHRGSQDNISVIVIDLKAQRRIKRKP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00532 561 Gene3D - 225 561 IPR036457 -
Vian1g00532 561 MobiDBLite consensus disorder prediction 349 369 - -
Vian1g00532 561 ProSiteProfiles PPM-type phosphatase domain profile. 238 551 IPR001932 -
Vian1g00532 561 SMART PP2C_4 228 549 IPR001932 -
Vian1g00532 561 CDD PP2Cc 240 551 IPR001932 -
Vian1g00532 561 PANTHER PROTEIN PHOSPHATASE 203 551 IPR015655 GO:0004722|GO:0006470
Vian1g00532 561 FunFam Protein phosphatase 2C 16 226 561 - -
Vian1g00532 561 SUPERFAMILY PP2C-like 235 552 IPR036457 -
Vian1g00532 561 ProSitePatterns PPM-type phosphatase domain signature. 285 293 IPR000222 GO:0043169
Vian1g00532 561 Pfam Protein phosphatase 2C 257 544 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00532 Vian-Chr1 5039394 5042030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00532 171 561 PP2C-type Phosphatase Gene Family AT4G26080 53.904 1.28e-135 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00532 K14497 - gmx:100789207 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00532 1 5039394 5042030 Vian1g00532 1 5039394 5042030 ECH
Vian1g00532 1 5039394 5042030 Vian4g00324 4 3599542 3601992 PCT