Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00531 ATGAAGAAAGGAAACTTGGGGCTTGGTCTCAAACTCTCTGTTCCTGTTTCTGATCAATCCAATTTTGCCAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAGTGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACGACCAGTTAACTTTGGCAGATGTAGATGTTATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTACAACATAAATGGACTAGTCAGTTTTTTGCATTGAAGGTAATTCAAATGAATATTGAGGAGTCTATGAGAAAGCAGATTGCACAAGAGTTGAAAATTAATCAACAGGCACAGTGTCCTTATGTTGTTGTCTGCTATCAATCATTTTATGAAAACGGTGTCATATCAATCATCCTAGAGTACATGGATGGGGGTTCCTTAGCTGATCTACTGAGGAAAGTTAAAACAATTCCAGAGCCTTTTCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAGTTTATCTTCACCATGAAAAGCATATTATCCACAGAGACTTGAAACCTTCTAATTTGTTAATAAATCATATAGGAGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACCTTCGTTGGAACTTACAACTATATGTCTCCGGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTATAAAAGTGATATATGGAGTTTGGGACTAATATTGCTAGAGTGTGCTTTGGGGCGGTTTCCATATACACCAGAAGATCAAAGTGAAATTTGGGAAAGCATTTTCGAGCTTATTGAAACCATTGTTGATAAACCTCCTCCTATTCCTCCGTCTGGACAATTTTCTACCGAATTCTGCTCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGAATCGACTGTCAGCTCAGGAATTAATGGGACATCCTTTTGTCAGCTTGTATGATGACTTGGAGGTGAATCTTTCATCTTACTTCTCCAATGCAGGATCTCCTCTTGCTACCTTATAA 1071 0.3996 MKKGNLGLGLKLSVPVSDQSNFAKFLTESGTFKDGDLLVNRDGVRIVSQSDVEAPPPIKPTDDQLTLADVDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLRKVKTIPEPFLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFVGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPEDQSEIWESIFELIETIVDKPPPIPPSGQFSTEFCSFISACLQKDPKNRLSAQELMGHPFVSLYDDLEVNLSSYFSNAGSPLATL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00531 356 FunFam Mitogen-activated protein kinase kinase 6 151 351 - -
Vian1g00531 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00531 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
Vian1g00531 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00531 356 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
Vian1g00531 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00531 356 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
Vian1g00531 356 CDD PKc_MAPKK_plant_like 85 336 - -
Vian1g00531 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vian1g00531 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Vian1g00531 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vian1g00531 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00531 Vian-Chr1 5033892 5038299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00531 1 327 MAP Kinase Kinase Gene Family AT4G29810 67.262 1.24e-170 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vian1g00531 Pkinase 5.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00531 K20603 - gmx:100789734 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00531 1 5033892 5038299 Vian1g00531 1 5033892 5038299 ECH
Vian1g00531 1 5033892 5038299 Vian4g00325 4 3603092 3607038 PCT