Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00529 ATGGTTTGGTTTCAATGCGAAGATTGTGGAGACAACCTCAAAAAACCCAAGTTGTCGAGTCACTTTCGGACTTGCTCCGCTTACAAATTGTCGTGCATTGACTGTGGGGAAATATTTGGGCGTGACACCGTTCAGGATCACACACAGTGCATTACAGAAGCTGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTCTGAGTGCTGCAACTGCCACGCCTAACAAGGATAACAAACAGAGGCCTGAAGTTGATATTAATGTGGGTTTATCTGAGCGGCCTCCTTGGTTCTGTAGTCTTTGCAATACAACAACTACAAGTAAGCAAACACTTCTTCTCCATGCTGACGGAAAGAAGCACAGGGCAAAGGCGAGAGCATTCCATGCTTCAAAGCAGCAACCAATCCAGGCAGATAAATCTGCTACCGATGATGCTAAGACTGTTGTGGAGACTGGTCCTAATGACAAGGTGAGAGATGACAGTAATGTAGAGGTGCCAAAATTGAAGGAGTCTTCTACACAAAATGACTCCAAACAAGGGAATGGAACTTCTTCAGCAAAGAAAAAGAGGAAACTTGAAGCATTGGGGGATGGGAAATCTGTTGACCTTGTTAAAAAAAACAGGAATGACACTTCGGTTGACATGGGAAATGGAGAAGTAATTCAGGGTGAAAAAGCAACAGGAAAGAGCAATTTGAAGAAAGAAGGGATGTTAGAACCTTGCTGTACAATTGCTGTCAAAAATAAAATAAAATGGAAGAAATTTATCAAATCAGCCTTGAAATCACATCCTGATGGAATTTTGAAGATGAAGAAACTTAGAAAAGTTGTTCTCAAAGCACTGCAAGAATCTGGCATTGCAGTGGATGAAGCTGAATTGAGCAAGGCGCTTGAGCAGAAGATCAATTCCAGCTCCAGATTTACAGTCGAGAACAAGTACGTGCGATTGGTGGCTAAAAACTGA 960 0.4229 MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTLSAATATPNKDNKQRPEVDINVGLSERPPWFCSLCNTTTTSKQTLLLHADGKKHRAKARAFHASKQQPIQADKSATDDAKTVVETGPNDKVRDDSNVEVPKLKESSTQNDSKQGNGTSSAKKKRKLEALGDGKSVDLVKKNRNDTSVDMGNGEVIQGEKATGKSNLKKEGMLEPCCTIAVKNKIKWKKFIKSALKSHPDGILKMKKLRKVVLKALQESGIAVDEAELSKALEQKINSSSRFTVENKYVRLVAKN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00529 319 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Vian1g00529 319 MobiDBLite consensus disorder prediction 121 198 - -
Vian1g00529 319 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Vian1g00529 319 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 316 IPR039999 GO:0003677
Vian1g00529 319 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Vian1g00529 319 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Vian1g00529 319 Pfam Zinc-finger of C2H2 type 95 119 - -
Vian1g00529 319 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Vian1g00529 319 FunFam UBP1-associated proteins 1C 89 132 - -
Vian1g00529 319 MobiDBLite consensus disorder prediction 58 81 - -
Vian1g00529 319 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Vian1g00529 319 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Vian1g00529 319 Gene3D - 1 50 - -
Vian1g00529 319 MobiDBLite consensus disorder prediction 166 181 - -
Vian1g00529 319 Gene3D Classic Zinc Finger 89 132 - -
Vian1g00529 319 MobiDBLite consensus disorder prediction 142 165 - -
Vian1g00529 319 SUPERFAMILY beta-beta-alpha zinc fingers 85 127 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00529 1 240 C2H2 Transcription Factor Family AT2G19380 33.750 4.42e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00529 K15263 - gmx:100790272 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00529 1 5016550 5019554 Vian1g00529 1 5016550 5019554 ECH