Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00522 ATGAAGCCATTCTTCTTGTCGAATCATCCTGATACTACTATGTACAATTGTTCACAAGTTGATTTCAGTCATTCAATGGCCCATACTCCTTACCCTTGTGGTGATCCTTATTTTGCCAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACCACAAATAATACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCTGTTGAGCTTGCAGAAGATGGTCCCATTTATGTCAATGCTAAACAATATCATGGTATACTCAGAAGGCGACAGTCCCGAGCAAAGCTTGAGGCCCAAAACAAACTCATCAAAAGTCGAAAGCCATATCTCCATGAATCTCGGCACCGTCACGCATTGAAGAGGGTTAGGGGGTCTGGTGGACGCTTTCTCAGCGCCAAGCAGCTGGAGTCTAATGCAGAACATGTTGATAATAATAGCCATTCAGGCCAAAAGAAAGATGCATCAGAGGTGGAAAGTCATAACTCAAGGACAGCAGAAAATGCATCTATCACATTTACAGCCATCTCTGGCTTAACAACCATGTCTAGTAACAGTCTGAATTTCAGGCAGCCCGAACACAACTTCTTGGGGAACTCCTCTAACATGGGTGGATCATCACAATGCAGTGGTGGACTCACGTTTGGTGGTGGAACTCGGCAATGTGCTTCTGTTGGCCGGTGA 690 0.4478 MKPFFLSNHPDTTMYNCSQVDFSHSMAHTPYPCGDPYFASSIVAYGPQAINQPQIIPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLESNAEHVDNNSHSGQKKDASEVESHNSRTAENASITFTAISGLTTMSSNSLNFRQPEHNFLGNSSNMGGSSQCSGGLTFGGGTRQCASVGR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00522 229 SMART cbf3 74 135 IPR001289 GO:0003700|GO:0006355
Vian1g00522 229 PRINTS CCAAT-binding transcription factor subunit B signature 109 132 IPR001289 GO:0003700|GO:0006355
Vian1g00522 229 PRINTS CCAAT-binding transcription factor subunit B signature 78 100 IPR001289 GO:0003700|GO:0006355
Vian1g00522 229 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 172 IPR001289 GO:0003700|GO:0006355
Vian1g00522 229 MobiDBLite consensus disorder prediction 148 163 - -
Vian1g00522 229 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 78 132 IPR001289 GO:0003700|GO:0006355
Vian1g00522 229 MobiDBLite consensus disorder prediction 139 168 - -
Vian1g00522 229 Gene3D - 75 137 - -
Vian1g00522 229 ProSiteProfiles NF-YA/HAP2 family profile. 75 135 IPR001289 GO:0003700|GO:0006355
Vian1g00522 229 ProSitePatterns NF-YA/HAP2 subunit signature. 80 100 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00522 Vian-Chr1 4952656 4953666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00522 23 150 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.688 1.85e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian1g00522 CBFB_NFYA 4.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00522 K08064 - gmx:100792905 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00522 1 4952656 4953666 Vian1g00522 1 4952656 4953666 ECH