Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00520 ATGCTTACGTGCATAGCTCGTCCGAAGAAACCTGATGAGTCAGATCCAAACAACGCGACAACCGCTGCTAAATCGCAAGCCATCAAATCCCTTACTTCTCAGATAAGGGATATGGCGTTGAAGGCTTCGGGTGCGTACAAGCATTGCGCTCCGTGCACAGGGCCAGCGGCGCAGGGACGAGTGCGGGGCAACACCGAGTCGGACGCGGACTCCGACCGGTTCCGGTGGTCGTACCGGCGGACAGGAAGTTCAAGCTCGACGACGACTCGGACGTGGGGGAAGGAGATGGAGGCGCGGCTAAAGGGGATATCGAGCGGGGAGGGGACGCCAAACTCCGCGAGCGGACGGCGAGCGGAGCCGTTGGTGCTGTTCGTGGAAGAGAACGAGCCGAAGGAGTGGGTGGCCCAGGTGGAGCCTGGCGTTCTGATTACCTTCGTGTCGTTGCCAGGTGGCGGTAACGATCTCAAACGCATACGGTTCAGTACCCGTGGTGCGGTTGTTTTCGTTGCCGTTGGGGGTATTGACCGGACGGTGAGTGTGGTGACAGTGTGTAGGGTTATGGTTGGTCGCTGTTTAGATCGTCCAGACTGTGATGATGACAACGAGTGCCTTTTGCTACGGTGGATTGTCAATTTCTCACACCTCATTAGTAGGGTCCTTTTCGCCTCTATTGCATTCTCTTCTTTGGTAAATCTGGAACACCTCACTTCAGGATATCGAGAGATGTTCAATAAATGGCAAGCACAAAGGTGGTGGGCAGACAACTACGACAAAGTTATGGAACTTTACAATGTTCAAAGGTTTAGCCGCCAAGCATTCCCTCTTCCAACGCCACCAAGATCTGAAGACGAGAGCACAAAGCTTGAATCAGCAGAAGCCAGTCCTGTAACACCTCCACTGACCAGGGAACGGTTACCTCGTACTATTTACCGTCCAACAGGGATGGGAATGGGATACTCATCCTCAGATTCATTTGATCATCAGTCAATGCAATCCCGGCATTTCTACGACTCAAATGGTTTGAACTCTACCCCAAAAGTCTCCACTATTAGTGCGGCCAAGACGGAGATATCATCAATGGATGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCTGGTGATTTATCAATCAGCAATGCCAGTGAGTTGGAGACTGAGTGGGTTGAACAGGATGAACCTGGGGTTTACATTACAATCAGAGCATTGTCAGGCGGCGCAAGGGAGCTCAAACGAGTCAGGTTTAGAACTCTACGGAATGTATTTCTTGATGTTGTGATGTGTTACACAGCCGAGAAAAATTTGGAGAGATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGCGAAGGTGTTGTCTTCTCTCTTGAATGTGGGTAG 1407 0.5124 MLTCIARPKKPDESDPNNATTAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPAAQGRVRGNTESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPLVLFVEENEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSTRGAVVFVAVGGIDRTVSVVTVCRVMVGRCLDRPDCDDDNECLLLRWIVNFSHLISRVLFASIAFSSLVNLEHLTSGYREMFNKWQAQRWWADNYDKVMELYNVQRFSRQAFPLPTPPRSEDESTKLESAEASPVTPPLTRERLPRTIYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGLNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSISNASELETEWVEQDEPGVYITIRALSGGARELKRVRFRTLRNVFLDVVMCYTAEKNLERCMLDYGGRRTVPEYMNNTCEGVVFSLECG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00520 468 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g00520 468 ProSiteProfiles BRX domain profile. 131 185 IPR013591 -
Vian1g00520 468 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 439 IPR044532 -
Vian1g00520 468 Pfam Transcription factor BRX N-terminal domain 20 52 IPR027988 -
Vian1g00520 468 ProSiteProfiles BRX domain profile. 388 445 IPR013591 -
Vian1g00520 468 Pfam Transcription factor regulating root and shoot growth via Pin3 387 418 IPR013591 -
Vian1g00520 468 Pfam Transcription factor regulating root and shoot growth via Pin3 240 263 IPR013591 -
Vian1g00520 468 Pfam Transcription factor regulating root and shoot growth via Pin3 131 163 IPR013591 -
Vian1g00520 468 MobiDBLite consensus disorder prediction 274 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00520 Vian-Chr1 4931184 4936384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00520 168 444 Major Intrinsic Protein MIP AT1G31880 37.413 1.33e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00520 - - gmx:100794109 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00520 1 4931184 4936384 Vian1g00520 1 4931184 4936384 ECH
Vian1g00520 1 4931184 4936384 Vian4g00332 4 3686931 3691200 PCT