Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00517 ATGGGCGATTTCCAAGGCCCCTTCATAGTGTCACCCCCTCCTTCACCCTCTTCCTCGGACAAGTCCAGCACAACCATGTTATACTATGGGCTTGTAGTGGTGGGGGTTGCAGCGGCGGCATTAGCCCTGTACAACTTCATAATCATCAGGAGGAGCAGAAGGAGGCACGTGCAATCAGAAGGCGAAGGGGGAAATGGGTTGGTGGAGGTGGTGAGTGAAAGTAGAATAGAGAACTTGGTGTCAAGCTTCAAGTACAAGAAAGAAGGAGTTGTGGGTTATGATGATGAATGCTCAGTTTGCTTATCTGGATTTGAAGAAGGAGAAGAAGTTCGGAAGCTTCCACAGTGCAAGCACTGGTTCCACGCTCCATGCATAGACATGTGGCTCTACTCTCACTTGGACTGCCCAATTTGTCGAACACCTGTGGTGCGTTTCTCGCAGACATTGCTGGAATGA 456 0.4978 MGDFQGPFIVSPPPSPSSSDKSSTTMLYYGLVVVGVAAAALALYNFIIIRRSRRRHVQSEGEGGNGLVEVVSESRIENLVSSFKYKKEGVVGYDDECSVCLSGFEEGEEVRKLPQCKHWFHAPCIDMWLYSHLDCPICRTPVVRFSQTLLE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00517 151 FunFam RING-H2 finger protein ATL1 64 144 - -
Vian1g00517 151 CDD RING-H2_EL5-like 96 139 - -
Vian1g00517 151 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g00517 151 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vian1g00517 151 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 143 IPR044675 -
Vian1g00517 151 SMART ring_2 97 138 IPR001841 -
Vian1g00517 151 SUPERFAMILY RING/U-box 90 144 - -
Vian1g00517 151 Pfam Ring finger domain 95 139 IPR001841 -
Vian1g00517 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00517 Vian-Chr1 4894221 4894676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00517 31 143 C3H Transcription Factor Family AT5G17600 38.235 3.90e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00517 - - vun:114177506 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00517 1 4894221 4894676 Vian1g00517 1 4894221 4894676 ECH