Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00511 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCCGAGAATACATTACACTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAACAGCAGGTTTGAAAAGGTGTGGCAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGCGAGGCAATATAACCTCTGATGAAGAAGAACTCATTATCAGACTCCACAACCTCCTCGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTTAAAGACGGTCACAAAACCTCATCAACCTTTTGTCGCAGACCAAGCAATGAAAACAGCACACGGAATCCAATGCCCCACTTGGCCAATCCTAAACCAGATTCCCACCTGGTCTGTACAAAAGCCACCAAGTGCACTAAGGTGTTTTTCCCTCACCCATCAATGCTGCAACTTCCCAACAAGTCCGAGGAAGAAGAAAAGGTTGTTGCGGATGCTGTGATGAGTGTCCAGATGGAACTCACTACCAACAACAATGGCTTCTTGTCGTTTCCCGATGAAGAAAAACAGCTCTCGGCAGACATGCTCACAGATTTCAACGTGGGGGATATCTGCTTGTCTGATCTTCTCGACTCCGATTTCAACAATATCTGCAACGACCAGCACTTATTCTCTCCTTGTTCGGACCAACCTTTTCATCTAGTCTGCTCCCAAGAACTTCTCAACAACTGCACGCAAACCAATTTTGCAGACCAAAACAGTGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGACACCACCGAGGAAACACTGGGAAAATCATAA 894 0.4452 MGRSPCCSKEGLNRGAWTAHEDKILREYITLHGEGRWRNLPKTAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHKTSSTFCRRPSNENSTRNPMPHLANPKPDSHLVCTKATKCTKVFFPHPSMLQLPNKSEEEEKVVADAVMSVQMELTTNNNGFLSFPDEEKQLSADMLTDFNVGDICLSDLLDSDFNNICNDQHLFSPCSDQPFHLVCSQELLNNCTQTNFADQNSASNNLHSFISFLDTTEETLGKS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00511 297 CDD SANT 16 61 IPR001005 -
Vian1g00511 297 MobiDBLite consensus disorder prediction 119 148 - -
Vian1g00511 297 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vian1g00511 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian1g00511 297 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vian1g00511 297 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 175 - -
Vian1g00511 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian1g00511 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian1g00511 297 MobiDBLite consensus disorder prediction 125 141 - -
Vian1g00511 297 FunFam MYB-related transcription factor 13 66 - -
Vian1g00511 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian1g00511 297 FunFam Transcription factor TT2 70 140 - -
Vian1g00511 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian1g00511 297 SMART sant 66 114 IPR001005 -
Vian1g00511 297 SMART sant 13 63 IPR001005 -
Vian1g00511 297 CDD SANT 71 112 IPR001005 -
Vian1g00511 297 Gene3D - 14 66 - -
Vian1g00511 297 Gene3D - 70 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00511 Vian-Chr1 4863971 4865355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00511 1 116 MYB Transcription Factor Family AT2G16720 73.276 2.07e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g00511 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00511 K09422 - gmx:100802704 415.616