Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00509 ATGATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCTCCTGATCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCAAGGCTCCTCCCTCACCAGTCTCAGCACTTTGGGTGGAACTATTTGCCAATGGGATTGGGGAGGAAAATAGACCCTGAGCCTGGTAGATGCAGGAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCTTATCCAGATTCAAAGTACTGCCAGAGGCACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCACCAACGACAGCAACAACGATCACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCTCCAACCACTCATTCTCTCTCTCATGACACTTACCATCACCACCACCCTCAACATTCGCCCCACTCCTTCCTCTATCATCACCCCTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGATAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAGGAGGTGGATGAGCATGCCTTCTTCACCGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACCATAAGCTCTTCTTCCTCATCAAAACAGAGGAGCTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGCCCCAGCAAGATCAGGCTTGCTACATATCAGGAAGCGGCAGTGGTATCAAGTGTGAAACTTTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACTGTTCATCGCTTCTTCGATGAATGGCCCCCCAAGAGCAGAGGATCATGGCTAGATTTGGATGACAAATCATCAACCACCCAGCTCTCAATTTCCATTCCCACTTCTTCCCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGCAGAACTGGGTTCAATGATTAAGGTTTCCGTCGACAACATCCCAATGAAATAG 1164 0.4716 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCQRHMHRGKNRSRKPVEVLKTSPTTATTITDASTPTILSITKNSPALSPTTHSLSHDTYHHHHPQHSPHSFLYHHPSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQACYISGSGSGIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRAELGSMIKVSVDNIPMK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00509 387 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian1g00509 387 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Vian1g00509 387 PANTHER GROWTH-REGULATING FACTOR 5 8 360 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vian1g00509 387 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian1g00509 387 MobiDBLite consensus disorder prediction 146 178 - -
Vian1g00509 387 Pfam WRC 78 120 IPR014977 -
Vian1g00509 387 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00509 Vian-Chr1 4838259 4840741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00509 7 120 GRF Transcription Factor Family AT3G13960 71.053 5.31e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vian1g00509 WRC 4.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00509 - - gmx:100783524 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00509 1 4838259 4840741 Vian1g00509 1 4838259 4840741 ECH
Vian1g00509 1 4838259 4840741 Vian4g00344 4 3845909 3847182 PCT