Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00488 ATGGCGAATCATGGTGATTTCACGTATGATGTTTTTATGAGTTTCAAGGGCGAAAACGGGACTCGCTACTCATTCACCGATCATCTCTACCGAGCTTTGCTCCGTCACGGAATCAACGCCTTCAGAGACGAACAGAGTCTCCGAAGCGGGGACGAAATCCGTCCTTCTCTGTTTCAGGCAATCGAAGCTTCCAGAATCTCTTTGGTCGTGCTCTGTCAAAACTATGCATCTTCCTCTTGGTGCCTTGACGAACTGGCCAAGATCCTTCACTGTTACGAAAACAAAGGAAAGCATGTGGTTGCAATTTTTTATTTGGTGGAACCTTCCGATGTACGGTACCAGAAAAACAGTTACGCAACTGCCATGAGTAAACATGAAAACAGATATGGAAAAGACTCGGAGAAGGTTAAAGCATGGCGATCAGCTTTGTCCAGAGTTTGCGACCTAACCGGAATACACTACAGGAACCATATGTATGAAACTGAGGTTATTGAGAAGATTGTGAAAGACACCTCAGCTAAACTGCCTCCCATGCCTTTACAAATCAAGCACCTAGTTGGACTTGATTCTCGTTTCGAACGGGTGAAATCTCTAATAGATGTTGAATCAAATGATGAAGTTTGTATACTGGGGATCTATGGGGTTGGCGGAATTGGCAAAACCACATTTGCTGTGGATCTGTATAACAAGATCAGGCATCATTTTGAAGCTGCAAGTTTTCTGGCTAATGTCAGAGAAAAAACAAATAAAAGCATTAAGGGCCTGGAAGATCTCCAAAGGACACTTTTGTCTGAGATGGGTGAAGAGACAGAAACCATTATTGGCAGTACATTTAAAGGAAGTTCTGAAATAAAGTGCAGGCTTGGACATAAAAGAGTTCTTCTGATTGTGGATGATGTTGATTCTGTAAAACAATTGGAAGCATTAGCTGGAGGATATGATTGGTTTGGTCCTGGTAGCAGGATCATTATAACAACAAGAGATAAAGATGTTCTACATAAGCATCATGTTGAAATTAAAGGATATAAAATGGAGGAGCTAAATTATCAGGAATCCCTTGAACTCTTTTGTTGGTATGCCTTTAATAGGAGCAGAGCTGCAGAAAACTTTGCTAACATCTCTACTAGTGCAGTAAGATATGCAAAGGGTATTCCGTTGGCATTAAGAGTAATAGGCTCCAATTTGAAGGGTAGAGGTCCTGAAGAATGCGAGACTGAATTACAGAAATATAGAAAGGTTCCAGATTCAGAGATTCAAGGTGTACTGGAAATAAGCTACACAAGCCTATCCAACTTGGACCAGAAAATTTTCCTGGACATTGCATGTTTCTTCAAAGGGGAAAGGTGGGATTATGTCAAAAGGATACTAGATGCTTGTGATTTCAACCCGGATATAAAAGTATTTGTTAGTAAATGTCTCATAACTGTTGATGAAAACGGTTGCTTGGAAATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTCGGAAGGAATCCCCATCAAACCCTGGTTACCGCAGCAGATTATGGTGTCATAAAGATGTTCATGAAGTACTTAAAGAAAACTCAGGAAGTGATACAGTTGAAGGAATAATGCTTTATCCCCCAAAACAAGAAAAAATAGATTATTGGACTATGACAGCCTTCAAGAAGATGAAGAACCTCAGAATTTTGATTGTTCGCAATGCAATATTTTCGTCTGGTCCTAGTTATCTGCCAAATAGTTTACGGCTAATCGATTGGAAGGGGTACCCATCAAAGTCTTTTCCGCCAGATTTTTATCCCCACAGAATTGTTGACTTCAAGTTACCTCATAGTTCTCTGATATTTAAAAAGCCATTTCAGAGATTTGAGGATCTGACATTCATCAATCTTTCCCATTGTCAATTCATAACTCAAATTCCTGACCTGTCTGGAGCTAAAAGCTTGAAGGTATTTACACTTGATAAATGCTATAGACTGACAAGGTTCGAAAAATCCATTGGGTTTATGCCTAACCTTGTGTACTTAAGTGCTTCAGAGTGCACTCTGCTCACAAGTTTTGTGCCAACGATGTATTTGCCCTCTCTCGAAGTGCTTTCATTTAACTTTTGCAGAAGACTTGAACACTTCCCTCATGTAATGCAAAAAATGGATAAGCCATTAAAGATATACATGATGAGTACTGCCATTAAAAAGATTCCGGAATCCATTGGTAACCTTACTGGACTTGAGCATATAGACATGTCAGTTTGCAAAGAGCTTAAAAATCTGCCAAGTAGCTTCTTTTTGCTCCCAAAACTTGTCACTTTAAAAGTTGATGAATGCTCTCAACTTGGAGAATCATTTCAAAGGTTCCAAAAGAGCCGCCATTCCGTGGCAAATGGCAGTTCAAATTTAGTGACACTTCATTTTTGTGAGACTAATCCATCATATGAAGATCTTTGTGCCATTCTTGAAACTTTTCCAAAATTAGAAGACTTAAATGTATCACACAACGGATTTGTAGCCCTACCAAACATCATCGGAGGATCTTCTCACTTGAAAAGTTTGGATGTTAGTTTCTGCAGGAATCTTAAGGAAATTCCAGAACTTCCCTTAAGTATTCAGAAAGTAGATGCAAGATACTGTCAGTCCTTGACTTCAGAGGCATCAAGCATGCTATGGTCTAAGGTCTCAGAAGAGATTCAAAGAATACAAGTTGTAATGCCGATGCTGAAAAGAGAAATACCTGAATGGTTTGACTGCATAGGCACTAAAGAGATTCCACATTTCTGGGCTCGCAGAAAGTTTCCTGTTGTTGCTTTAGCATTAGTTTTCCAGGAATCGAAAAAGAAACTGTCTGATTTTGAACATGCTTTCCAGTCAGCTGTAGAATCGTTCACTGGATTTGTGAACTGGCACACTGTAAGCCTCCACTTGTTTATTGACGGACAAGAAATATGTGGTAGAGATTACCACTGTTTCAACGTTGGAGAAGATCATGTGTTATTTTGTGATCTGCGAGTCTTGTTCAGGGATGAAGAGTGGCAGGGCCTTGACGCAAGTCTTGGAGATGATTGGAAGGCCATTCAGGTTCAATACGAATCAGACCTGATTCTGAGTCATTGGGGAGTTAATGTGTACGAGCAAGAAACAAACACGGATGATATCCAGTTCAGGTTTCCCACTCCCAGCTCCAGGAGGAACTTAATTCCATCATCACTTTTGGTTCCAAAAGGTTGTCCAAAGCAGAAAATGAAACATATGCTGGAAAGTTTTGATCCACGAGACATCTTTAACAAGAATCTGTCTCTAATAGAGTCAGAAGAAGGTCCAAGCAGGGCTGGAAAAGTACTTTTGAGGACCTGGAGGAATGCTAAGGCTGAGATTACCGAGGAAGCTTCAATTTCAGTCTACGGGGCAAGTTTAAAGCAAGAACACGAAGAATCTGTTGACGATGTGGTACAGGTTTTAGAGATGATAAAGGAGAATGTACCCAAACATTTTTCTGATTCAAATCCTGAAGAAATGCAATCGTTTGGTGGATTTGTAGAAAGATTATTGAGGGCACGGGTAGAAGTAATGAAGGAAAAGGGGTTGGACATGGGTATGCCTATTCTTCTAGAGTACACTGACGGAGGAGGATCTAAATATCGACGCTTTTGGGGAGTGTTGCAATTAAAAGTGGGAGATCCATTTTACAAAGCAGTGTTGAGGAAGTATATCCAACTTTCATTGGAATTTTCGGCAAGCAACAAAGCCGCCTCCAGCTCAGGTTCGTGGTTTGAAAACTTGAGGATAACCATTGTTTTATTGAAATGCTTGGATCCAGCCATGGATGAAGCTTTGGGCTTTGGCTACGAGGAATCCTTGGAGGAAGGATACTACGATCCTGAATTGGAAGAATTAATGATGAGGATTGAGCAAGATGGTATGGGGTTTAATAAATCTTACGGCAAAATGAAGGCATCTATTGTTCGAACCGATGAATCGGTTTCTCCAGAGTATTTATTTGAGACATTAATCTTCAGAAGACTAATAGCTTTGGGGAAATTGTCAATGTTTGGATCTGCAACTAAGTTCAAGATAACACCGTATGGGAATATAAGGGTTGAGGACGATCCTTTCCGCATTCCGAAGACGTGCTTCTGGAGTTTGATCTTGGTTCTTCATCTACTTTTCTTCATAATCATATGGTTATTTTGTTCGGTAGGATATGTGGGGCTTTTGATTTGTAGAATACCAGTAATAGGAAAGATATTAGTGTGTGGTTGGTGGCTTGTCATGCAAATTCTTGTATCTTGTAAATACTTGTATCATAGAATGGGTAAGATTATGAAAATAAAGAAGAAGGACTTGTAA 4326 0.3992 MANHGDFTYDVFMSFKGENGTRYSFTDHLYRALLRHGINAFRDEQSLRSGDEIRPSLFQAIEASRISLVVLCQNYASSSWCLDELAKILHCYENKGKHVVAIFYLVEPSDVRYQKNSYATAMSKHENRYGKDSEKVKAWRSALSRVCDLTGIHYRNHMYETEVIEKIVKDTSAKLPPMPLQIKHLVGLDSRFERVKSLIDVESNDEVCILGIYGVGGIGKTTFAVDLYNKIRHHFEAASFLANVREKTNKSIKGLEDLQRTLLSEMGEETETIIGSTFKGSSEIKCRLGHKRVLLIVDDVDSVKQLEALAGGYDWFGPGSRIIITTRDKDVLHKHHVEIKGYKMEELNYQESLELFCWYAFNRSRAAENFANISTSAVRYAKGIPLALRVIGSNLKGRGPEECETELQKYRKVPDSEIQGVLEISYTSLSNLDQKIFLDIACFFKGERWDYVKRILDACDFNPDIKVFVSKCLITVDENGCLEMHDLIQDMGREIVRKESPSNPGYRSRLWCHKDVHEVLKENSGSDTVEGIMLYPPKQEKIDYWTMTAFKKMKNLRILIVRNAIFSSGPSYLPNSLRLIDWKGYPSKSFPPDFYPHRIVDFKLPHSSLIFKKPFQRFEDLTFINLSHCQFITQIPDLSGAKSLKVFTLDKCYRLTRFEKSIGFMPNLVYLSASECTLLTSFVPTMYLPSLEVLSFNFCRRLEHFPHVMQKMDKPLKIYMMSTAIKKIPESIGNLTGLEHIDMSVCKELKNLPSSFFLLPKLVTLKVDECSQLGESFQRFQKSRHSVANGSSNLVTLHFCETNPSYEDLCAILETFPKLEDLNVSHNGFVALPNIIGGSSHLKSLDVSFCRNLKEIPELPLSIQKVDARYCQSLTSEASSMLWSKVSEEIQRIQVVMPMLKREIPEWFDCIGTKEIPHFWARRKFPVVALALVFQESKKKLSDFEHAFQSAVESFTGFVNWHTVSLHLFIDGQEICGRDYHCFNVGEDHVLFCDLRVLFRDEEWQGLDASLGDDWKAIQVQYESDLILSHWGVNVYEQETNTDDIQFRFPTPSSRRNLIPSSLLVPKGCPKQKMKHMLESFDPRDIFNKNLSLIESEEGPSRAGKVLLRTWRNAKAEITEEASISVYGASLKQEHEESVDDVVQVLEMIKENVPKHFSDSNPEEMQSFGGFVERLLRARVEVMKEKGLDMGMPILLEYTDGGGSKYRRFWGVLQLKVGDPFYKAVLRKYIQLSLEFSASNKAASSSGSWFENLRITIVLLKCLDPAMDEALGFGYEESLEEGYYDPELEELMMRIEQDGMGFNKSYGKMKASIVRTDESVSPEYLFETLIFRRLIALGKLSMFGSATKFKITPYGNIRVEDDPFRIPKTCFWSLILVLHLLFFIIIWLFCSVGYVGLLICRIPVIGKILVCGWWLVMQILVSCKYLYHRMGKIMKIKKKDL 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00488 1441 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 176 - -
Vian1g00488 1441 Gene3D - 346 430 IPR042197 -
Vian1g00488 1441 SMART till_3 8 149 IPR000157 GO:0007165
Vian1g00488 1441 PRINTS Disease resistance protein signature 381 395 - -
Vian1g00488 1441 PRINTS Disease resistance protein signature 209 224 - -
Vian1g00488 1441 PRINTS Disease resistance protein signature 287 301 - -
Vian1g00488 1441 PRINTS Disease resistance protein signature 733 749 - -
Vian1g00488 1441 SUPERFAMILY L domain-like 498 880 - -
Vian1g00488 1441 ProSiteProfiles TIR domain profile. 7 175 IPR000157 GO:0007165
Vian1g00488 1441 Pfam NB-ARC domain 192 411 IPR002182 GO:0043531
Vian1g00488 1441 Pfam TIR domain 9 182 IPR000157 GO:0007165
Vian1g00488 1441 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 775 IPR044974 GO:0006952
Vian1g00488 1441 Gene3D - 175 341 IPR027417 -
Vian1g00488 1441 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Vian1g00488 1441 Gene3D - 7 174 IPR035897 -
Vian1g00488 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 440 IPR027417 -
Vian1g00488 1441 Gene3D Ribonuclease Inhibitor 542 718 IPR032675 -
Vian1g00488 1441 Gene3D Ribonuclease Inhibitor 719 894 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00488 Vian-Chr1 4612437 4620142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00488 9 783 WRKY Transcription Factor Family AT4G12020 30.991 5.37e-87 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00488 - - vum:124827448 1864.74