Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00485 ATGGCCGCTGTTCGCCTATTCTTCTTCCTCCTCCTCCTCTCCCTCCTCCCTCTCTCCCATCCTCTCTCGGATAACCAAGCTCTCCTCAACCTAAAAAAGTCCTTCTCCGACCCCCAATCCCTCTCCTCCTGGGTCCCCGACCAGAACCCTTGCTCCTCCCGTTGGGTCGGCGTCATCTGCGTCAACAACGTCATCAACAGCCTCCATCTCACCGACCTCTCCCTCTCCGGCACCATAGACATCGAAGCCCTCTCCCAGATCCCCTCTCTCCGCTCCATCAGCTTCGTCAACAACAACTTCTCCGGCCCCATTCCTCCCTTCAACAAACTCGGAGTCCTCAAAGCCATCTACTTGACCAACAACAAGTTCTCCGGCCCCATCCCCTCCGATTTCTTCTCCCAGTTAGCCTCCTTGAAGAAAATATGGCTTTCCAACAACAAATTCTCCGGCCCCGTCCCCCAATCCTTAACCACCCTCCGCTTCCTCTCCGAGCTCCATCTCGAGAACAACGAGTTCTCCGGCCCCGTCCCCGAACTCAAACAGGACATCAAATCACTCGACTTCTCCAACAACAAGCTCCGAGGCCCAATCCCCTCCTCCATGTCGCGCTTCGACGCCAAATCTTTCTCCGGCAACATTGAACTCTGCGGGATGCCGCTGGATAAACCGTGTGAGTCCGCGGCCAGTGAAGGCCCCGGTTGGGGATTAAAGGTGGTTATTATCATCTTCATTGCCGCTGTTCTCGCCGGCGTTTTCGTCATGGCGCGATCCAAGCGTCAACGCGACGATGACTTCAGCGTGATGAGCAGGGATAACGCGGAAGAGGTGGTGCAGGTGCACGTGCCAAGCACCAACCACAGCAGGGGAACCTCCGATGGGAGCAAGAAGGAGTCGACGACGTCGAAGAAAGGGGCGGGGCGGAGTATTGGTGACCTCGTGATGGTGAACGACGAGAGGGGCACGTTTGGGTTGCCTGATCTGATGAAGGCTGCGGCGGAGGTTCTCGGAAACGGTGGGCTGGGTTCGGCGTACAAAGCCGCCATGGCCAGTGGGTTGTCTGTGGTGGTAAAGCGGATGCGGGAGATGAATAAAGTGAGCAGAGACATCTTCGACGCCGAGATGAGACGTTTTGGAAGAATCAGAAACCCTAACATCATCACGCCTCTCGCTTACCATTACCGAAAGGAGGAGAAGCTGTTCGTCACAGAGTACATGCCCAAAGGAAGCTTGTTATACGTCTTGCACGGTGACAGAGGATCGAGTCATTCGGACCTGAACTGGCCAATCCGTTTGAAAATCGTGAAGGGAATAGCACGAGGGTTAGGGTTTCTGTATAAAGAATTTTCTAGCGAAGACCTGCCACATGGAAACCTGAAATCAAGCAATGTTCTGCTAACTGATAATTACGAAGCTCTCCTCGGAGATTTCGCCTTTCATCCTCTCATGAACCACAACTACGCCGTACAGACAATGTTTGCATACAAAACTCCAGATTACGTAACATACCAGCGTGTGACACAGAAAACCGACGTCTACTGCCTCGGAATCATCGTTCTTGAGGTGATCACCGGGAAATTCCCTTCTCAGTATCACAGCAATGGCAAGGGTGGCACTGACGTGGTGCAATGGGTGCTAACTGCAATCTCAGACAGAAGAGAGGCGGAATTGATCGATCCAGAGTTGAAGAGCAGTCACTCTAACTCCCTGAATCAAATGCTGCAACTTCTCCAAATAGGGGCTGCTTGCACGGAGAGCAACCCCGACCAACGACTTAACATGAAAGAAGCCATTAGGAGGATAGAGGAGGTTCAGGTTTAA 1818 0.5319 MAAVRLFFFLLLLSLLPLSHPLSDNQALLNLKKSFSDPQSLSSWVPDQNPCSSRWVGVICVNNVINSLHLTDLSLSGTIDIEALSQIPSLRSISFVNNNFSGPIPPFNKLGVLKAIYLTNNKFSGPIPSDFFSQLASLKKIWLSNNKFSGPVPQSLTTLRFLSELHLENNEFSGPVPELKQDIKSLDFSNNKLRGPIPSSMSRFDAKSFSGNIELCGMPLDKPCESAASEGPGWGLKVVIIIFIAAVLAGVFVMARSKRQRDDDFSVMSRDNAEEVVQVHVPSTNHSRGTSDGSKKESTTSKKGAGRSIGDLVMVNDERGTFGLPDLMKAAAEVLGNGGLGSAYKAAMASGLSVVVKRMREMNKVSRDIFDAEMRRFGRIRNPNIITPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDRGSSHSDLNWPIRLKIVKGIARGLGFLYKEFSSEDLPHGNLKSSNVLLTDNYEALLGDFAFHPLMNHNYAVQTMFAYKTPDYVTYQRVTQKTDVYCLGIIVLEVITGKFPSQYHSNGKGGTDVVQWVLTAISDRREAELIDPELKSSHSNSLNQMLQLLQIGAACTESNPDQRLNMKEAIRRIEEVQV 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00485 605 FunFam Nuclear pore complex protein NUP107 22 178 - -
Vian1g00485 605 SUPERFAMILY L domain-like 22 204 - -
Vian1g00485 605 Gene3D Transferase(Phosphotransferase) domain 1 406 605 - -
Vian1g00485 605 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 604 IPR046959 -
Vian1g00485 605 Pfam Protein kinase domain 333 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00485 605 MobiDBLite consensus disorder prediction 277 307 - -
Vian1g00485 605 Gene3D Ribonuclease Inhibitor 184 224 IPR032675 -
Vian1g00485 605 SUPERFAMILY Protein kinase-like (PK-like) 333 600 IPR011009 -
Vian1g00485 605 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Vian1g00485 605 Gene3D Ribonuclease Inhibitor 23 180 IPR032675 -
Vian1g00485 605 Pfam Leucine rich repeat 113 171 IPR001611 GO:0005515
Vian1g00485 605 ProSiteProfiles Protein kinase domain profile. 329 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00485 605 Gene3D Phosphorylase Kinase; domain 1 335 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00485 Vian-Chr1 4599604 4601560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00485 2 605 Receptor kinase-like Gene Family AT3G42880 50.314 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian1g00485 Pkinase 6.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00485 - - vum:124828555 1150.19