Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00483 ATGTCCACCTCCTCGGAGTATTCAGGATTTTCCGGTAACCGGCCGGTGAAGACGACGCCGGAGAAGTCCACGTTCTCTCAGACTTGCAGTCTATTGAGTCAATACCTCAAGGACAAGGGTACATTCGGAGACCTTACTCTCGGGATGACACGCACCGTCGAAGCAAACGGTTCTTCTTCTGAAGCATCGTGTCACCCTCCAACAACCATGGAGTTGTTTCCCACCATCTTGACCCAAAGGAACCTTTCTGTTGTGGATTTCTTCTCTCCGGAGCCTGCTTATCTTCACCAATCAGAGCTTCCAACTTTTGTGAATATGTCAAGTGGTTTCAAGTCTGTGGAGAAGGAGCCCAAATCTGCTCCTTTGACAATCTTTTATGCTGGACAAGTGATTGTGTTTAATGATTTTCCCCCTGAAAAGATGGAGGAGATAATGGCACTGGCAAGCAAGGGAATGCCCCAAAGCCCAAACTACCAGGCATATGCTCACACTAGAAACCAGCAAGGAAATCATACTTCCTTTGTTGCTAATGTCCCTCAACCATCTCCCATACCAACTGTTCGAGATCTTCCAATTGCGAGGAAAGTTTCACTTCATCGGTTCTTCGAGAAGAGAAAACACAGAATTGCTGCCAATGCGCCATATCAAATAAACAATCTCAACTCTGTTGCAAATAAGCATGCCGCAGAATCCATTCCATGGCTTGGATTTGGTGTTCCATCAAAACAAATATGA 735 0.4585 MSTSSEYSGFSGNRPVKTTPEKSTFSQTCSLLSQYLKDKGTFGDLTLGMTRTVEANGSSSEASCHPPTTMELFPTILTQRNLSVVDFFSPEPAYLHQSELPTFVNMSSGFKSVEKEPKSAPLTIFYAGQVIVFNDFPPEKMEEIMALASKGMPQSPNYQAYAHTRNQQGNHTSFVANVPQPSPIPTVRDLPIARKVSLHRFFEKRKHRIAANAPYQINNLNSVANKHAAESIPWLGFGVPSKQI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00483 244 Pfam Jas motif 191 216 IPR018467 -
Vian1g00483 244 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 21 224 IPR040390 -
Vian1g00483 244 MobiDBLite consensus disorder prediction 1 23 - -
Vian1g00483 244 Pfam tify domain 116 149 IPR010399 -
Vian1g00483 244 SMART tify_2 115 150 IPR010399 -
Vian1g00483 244 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00483 Vian-Chr1 4582388 4584147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00483 1 239 Tify Gene Family AT1G19180 41.221 6.49e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vian1g00483 tify 4.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00483 K13464 - gmx:100527510 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00483 1 4582388 4584147 Vian1g00483 1 4582388 4584147 ECH