Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00482 ATGCAGCAACAGAGGTTAAGACAGCATGCCATGATGCAACCCTCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCCCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCGGCTGCAGGTGCCCTTGAAGGATGCAAGCTTATCAGGAAAGAGAAGTCATCCTATGGTTTTGTGGACTACTTCGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTCAATATTTTTGTTGGTGACCTTAGTCCTGAGGTCACAGATGCGACTTTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAAAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCAACAAAAGGGGCCAGTGCAAGTGATGAAAAGCAGAGTTCGGATTCCAAAAGTATCGTGGAGTTGACTAATGGAACATCAGAAGAAGGCCAGGAAATAACCAATGATGACCCCCCCGAGAAGAATCCTCAATATACCACGGTTTATGTTGGCAATCTTGCTCCGGAGGTCACTTCTGTTGATCTCCATCACCATTTTCATTCTCTTGGTGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGAATTCTCTTTGGCAAACCTATAAAGTGTTCATGGGGTAGCAAACCTACTCCTCCAGGAACTGCCTCTACTCCTCTTCCGCCTCCTACTTCTGCAAATGTGCCTGGTTTCTCTCTTGCTAGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTGCACACGCCCTTCTGCATCAGCAAGGACAGCATGCCCTAAAACAGGTAGCCATGGGAATGGGTGCTCCAGGGGCTGGTTATGATGCAAGGTTTCAGAATGTTGCTACCACCCAGCACCTAATGTACTATCAGTAA 1236 0.4636 MQQQRLRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSAAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKSIVELTNGTSEEGQEITNDDPPEKNPQYTTVYVGNLAPEVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPTSANVPGFSLASLAAYERQMALSKMGGAHALLHQQGQHALKQVAMGMGAPGAGYDARFQNVATTQHLMYYQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00482 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 329 - -
Vian1g00482 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Vian1g00482 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Vian1g00482 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Vian1g00482 411 Gene3D - 229 330 IPR012677 -
Vian1g00482 411 SUPERFAMILY RNA-binding domain, RBD 45 210 IPR035979 GO:0003676
Vian1g00482 411 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Vian1g00482 411 SMART rrm1_1 132 205 IPR000504 GO:0003723
Vian1g00482 411 SMART rrm1_1 253 322 IPR000504 GO:0003723
Vian1g00482 411 SMART rrm1_1 47 116 IPR000504 GO:0003723
Vian1g00482 411 CDD RRM2_PUB1 130 209 - -
Vian1g00482 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Vian1g00482 411 Gene3D - 1 127 IPR012677 -
Vian1g00482 411 Gene3D - 128 224 IPR012677 -
Vian1g00482 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Vian1g00482 411 FunFam Oligouridylate-binding protein 1C 229 330 - -
Vian1g00482 411 MobiDBLite consensus disorder prediction 209 251 - -
Vian1g00482 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Vian1g00482 411 SUPERFAMILY RNA-binding domain, RBD 242 331 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00482 Vian-Chr1 4574096 4578264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00482 47 326 Eukaryotic Initiation Factors Gene Family AT2G23350 30.584 4.12e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00482 K13201 - gmx:100813736 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00482 1 4574096 4578264 Vian1g00482 1 4574096 4578264 ECH