Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00479 ATGAAGGTTCCATCCAATGGTTTCTTGCCTAATTCTGGCGAAGGGGAAAGGAAGCCGATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTCTGGTGTCTTTGCCTCCTGTTGGAAGTCTTGTGGTGTACTTCCCCCAAGGACACAGCGAACAAGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATTCCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCATTGCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGGCAGCCTACTGAGTTCTTCTGCAAAACACTTACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCGACTTTGGATTATTCAATGCAGCCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCATGATAGTACATGGCCATTTAGACATATTTATAGAGGACAACCAAAGAGGCATCTATTAACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGCTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGAAGCATCTTCTTTTAGGTATAAGGCGTGCTAACAGACAGCAACCAGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATCCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGCCCTTTTACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCACTGGCCAAGTACAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAATCTGGAGTACGCAGATATATGGGGACAATAACTGGGATCAGCGACTTGGATCCTGTACGATGGAAGAACTCACAATGGCGAAACATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCCAGTAGAGTTTCAATTTGGGAAATTGAACCAGTAGTTACTCCTTTCTATATTTGTCCACCTCCTTTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGAAGAATCGGATATGGAAAATGCTTTCAAGAGAGGTATGCCCTGGCTTGGAGAGGAGTTTGGCATGAAGGATGCCTCTAGTTCAATCTTTCCTGGTTTTAGTTTAGTTCAGTGGATGAGCATGCAACCGAATAATCAGCTCTCAGCGACTCAATCAGGATGTTTCCCATCCATGCTTCCATCTAATACTCTTCAGGGTAACCTTGGCACCGAAGACCCATCCAAGTTATTGAGCTTTCAACCTCCTGTTCTCTCTTCCCCAACTCTTCAATTAAACAAACCCAATCTGCCAAATCAAATCAACCAGTTGCAACAGTCCCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAGCAACAGCAGCAGCTACAGCAACAACAACAGCTGCAGCAGCAGCAACTACAGTCATTGTTGCAAATACCAATGAACCATCTCCAGCAACAGAGGCAACAGCAGCTGCCTGAGCCACAAAACCTGCCATTGCTGCAGCAAATGCCTCAACAGCTAGGACAGCAGCCCCAGAAACCGCAACAGCCAAGTCAGCATGCTACTCTTATGAATAATGGGGTAGTTTCTTCTAACCAGATTACAGGTCAGTTTGTACAACCACCAATGGCATATGGTCAGCTTCAGCAGCAACAATTACTCTCAGGAGGTATCCAAACCCAGCAAGGTATCCAATCAGCTAGTAAGAATACGTTCCCATTGACATCCTTACCACATGACTCGCAATTTCAGCAACAGTTAGACCAGCAAGCTAACCTACTGAGGCAACAACAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGATTGCATCACAACAACAACCGCCTGCTACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTACAGTTGCTACAGAAATTGCAGCACCAACAACAGCAACTTCTTTCTACGTCCACCCCACTATTGCAGTCTCAGCTTCTACCGCAACAAAATCCTCACCAACAAAACCAGCAATTACCACTGCCCCCACCACCTATATCACATCATCAGCCTCAACAGCTTGCCAATAATGTATGTTCAACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCTTCATCTCTTATGCAATCACAACAGAATCCTATGAGCCAATCCCAGAATACACAGAAATCACTTACCACCACCAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCGGCCCCATTAGGGGGGAGTTTGATGGTTGAGCCCACTAGTAATCTGTTACAGGATCTTCACAGTAAGCCTGACATGCAGAACAAACATGAGTTGCTCAATCTAAAAGGACCTGACCAGTTGAAGTATAAAGGGGCAATCACCGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTTTCGAACTTCTGCATGGAAGGGGATGCCCAATCACACCCAAGAAACAGTTTACCATTTGACACTAATCTGGATGATCTAACCCCTGATACCATGCTTTTAAGGGGATATGACTCTTCAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCTAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTCAAGCCCGGTTGCTCAAGTGATGTTGTCATCAACGAAACTGGTGTTCTGAATAATAGTGGCTTGCGGGGCAACCAACCTCCACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGCATTGATGTTACCCGTTACAGGGGATATGATGAACTTCGGCATGATTTGGCTAAAATGTTTGGGATTGAAGGGCAGCTAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTGCAGAGCATAAAGATATTGTCTCATTCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCTAATCAAGCTTGCAGTGGGACAGAGAGTGGCAATGCATGGAGGGGACAATATGAAGATAACTCAGCTGCCTCTTTTAATAGGTAA 3372 0.4493 MKVPSNGFLPNSGEGERKPINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDSTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKKHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDEESDMENAFKRGMPWLGEEFGMKDASSSIFPGFSLVQWMSMQPNNQLSATQSGCFPSMLPSNTLQGNLGTEDPSKLLSFQPPVLSSPTLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQQLQQQQQLQQQQLQSLLQIPMNHLQQQRQQQLPEPQNLPLLQQMPQQLGQQPQKPQQPSQHATLMNNGVVSSNQITGQFVQPPMAYGQLQQQQLLSGGIQTQQGIQSASKNTFPLTSLPHDSQFQQQLDQQANLLRQQQQQTQLQQSPLQLLQQNLPQIASQQQPPATQMLQQNPSEQQLHLQLLQKLQHQQQQLLSTSTPLLQSQLLPQQNPHQQNQQLPLPPPPISHHQPQQLANNVCSTEKLLNSNNFSSSSLMQSQQNPMSQSQNTQKSLTTTRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPAPLGGSLMVEPTSNLLQDLHSKPDMQNKHELLNLKGPDQLKYKGAITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDTNLDDLTPDTMLLRGYDSSKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMPFKPGCSSDVVINETGVLNNSGLRGNQPPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRHDLAKMFGIEGQLDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGNVPIPNQACSGTESGNAWRGQYEDNSAASFNR 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00479 1123 FunFam Auxin response factor 124 228 - -
Vian1g00479 1123 SUPERFAMILY CAD & PB1 domains 1009 1074 - -
Vian1g00479 1123 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vian1g00479 1123 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vian1g00479 1123 SMART B3_2 126 228 IPR003340 GO:0003677
Vian1g00479 1123 Gene3D - 992 1084 - -
Vian1g00479 1123 Gene3D - 123 227 IPR015300 -
Vian1g00479 1123 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vian1g00479 1123 MobiDBLite consensus disorder prediction 713 736 - -
Vian1g00479 1123 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vian1g00479 1123 ProSiteProfiles PB1 domain profile. 996 1079 IPR000270 GO:0005515
Vian1g00479 1123 MobiDBLite consensus disorder prediction 1103 1123 - -
Vian1g00479 1123 Coils Coil 494 517 - -
Vian1g00479 1123 MobiDBLite consensus disorder prediction 444 477 - -
Vian1g00479 1123 MobiDBLite consensus disorder prediction 755 806 - -
Vian1g00479 1123 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian1g00479 1123 FunFam Auxin response factor 991 1084 - -
Vian1g00479 1123 Gene3D - 289 360 - -
Vian1g00479 1123 Pfam AUX/IAA family 994 1082 IPR033389 -
Vian1g00479 1123 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1084 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian1g00479 1123 FunFam Auxin response factor 289 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00479 Vian-Chr1 4547927 4553623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00479 1 487 B3 DNA Binding Superfamily AT1G19220 83.368 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian1g00479 AUX_IAA 4.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00479 K14486 - gmx:100816054 1679.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00479 1 4547927 4553623 Vian1g00479 1 4547927 4553623 ECH