Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00470 ATGGATGATGGTGGAGGTTCCAAATTGAGTGGGATTAGGCAGATTGTGAGATTGAAGGAAATGTTTCAGAAGTGGCAAACTGTGACTCTGGGCTCAAAAGATTCAAACCATGATTCTGATGTTGCTCGTCCTGGAGGCATTCCACCATTGATAAACAAAAGACTAACAAATCTTTTGTACTGTGACTCTGATGAGGATAGCTGCTACAGTCCTCAACCACCGCATGATGTTCCCAAAGGTTACTTAGCTGTCTATGTTGGGCCTGAGCTTCGGAGGTTTATCATCCCAACAAGCTACCTTAGCCACTCTTTGTTCAAGGTTTTGTTGGAAAAAGCTGCAGAGGAGTTTGGGTTTGATCAGAGTGGTGGACTCACTATTCCGTGTGAAATTGAAACCTTCAAATACCTCTTGAACTGCATGGAGAACCACGATGACAGCTCCGTCGCTGGAAACACAGCAACAGTGGAAGAATAA 474 0.443 MDDGGGSKLSGIRQIVRLKEMFQKWQTVTLGSKDSNHDSDVARPGGIPPLINKRLTNLLYCDSDEDSCYSPQPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAAEEFGFDQSGGLTIPCEIETFKYLLNCMENHDDSSVAGNTATVEE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00470 157 Pfam Auxin responsive protein 68 139 IPR003676 GO:0009733
Vian1g00470 157 Coils Coil 155 157 - -
Vian1g00470 157 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 60 136 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00470 Vian-Chr1 4405234 4406075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00470 1 156 Calmodulin-binding Proteins AT3G43120 65.625 4.33e-72 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00470 K14488 - vra:106767875 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00470 1 4405234 4406075 Vian1g00470 1 4405234 4406075 ECH
Vian1g00470 1 4405234 4406075 Vian4g00385 4 4379498 4380010 PCT