Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00468 ATGGGTCACGTTGAAAGTGGCGGTTCATTTTTTGCTGCAGTTACACTCGCACTCCACCTCGTAACAGCAACCATCCTTTTCCTTCCCCCATCTTCTTTAAACAGCGCTGTTAGAATCGTTAGGGTTCGTAGGGACGGCACGGGGGATTTCAGGACGGTGACGGAGGCCGTCAACAGCATTCCTTCAGGGAACAAGCGGCGAGTGGTGGTGTGGATCGGAATTGGCGAGTACCGCGAGAAGATAACAGTCGATAGGTCCAAACCTTTCGTCACGTTTTATGGAGAGAGAAATGACAGCGACACCCACACCATGCCCATCATAACGTACCACGCCACCGCGTTAAGGTATGGGACAGTCGACAGCGCCACCAGAAGTACCATAGAATCGGTTGCAAAGGGTTTGAGTGTTATAACAGCACAAGGGAGGGAAAGCGTTGCAGAAGATACTGGATTCAGTTTCCTTCACTGCAACATTACGGGGAGTGGTAACAGGAACACTTACCTCGGACGTGCGTGGAAGAAGAGCCCTAGAGTGGTATTTGCTTACACTTACATGGGCTCCCTCATCAGTGCCCGGGGATGGTTCACCAATCAACTTCCTCAACGCAAGTCCAACCAGACAATCTACTATGGAGAATATAGGTGCATGGGAGCAGGAGCTTTTTCCTCTGGGCGTGTAAAATTTCGGAAGATACTGTCGTATGAAGAAGCAAAGCCCTTCATGAGCATGGCCTATATTCATGGAGGAAAGTGGGTTGTCCCACCTCCAAAGCTGTGA 777 0.5032 MGHVESGGSFFAAVTLALHLVTATILFLPPSSLNSAVRIVRVRRDGTGDFRTVTEAVNSIPSGNKRRVVVWIGIGEYREKITVDRSKPFVTFYGERNDSDTHTMPIITYHATALRYGTVDSATRSTIESVAKGLSVITAQGRESVAEDTGFSFLHCNITGSGNRNTYLGRAWKKSPRVVFAYTYMGSLISARGWFTNQLPQRKSNQTIYYGEYRCMGAGAFSSGRVKFRKILSYEEAKPFMSMAYIHGGKWVVPPPKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00468 258 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 30 126 - -
Vian1g00468 258 Gene3D - 21 123 IPR012334 -
Vian1g00468 258 Gene3D - 124 255 IPR012334 -
Vian1g00468 258 SUPERFAMILY Pectin lyase-like 39 252 IPR011050 -
Vian1g00468 258 Pfam Pectinesterase 41 101 IPR000070 GO:0030599|GO:0042545
Vian1g00468 258 Pfam Pectinesterase 133 248 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00468 Vian-Chr1 4393206 4394596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00468 35 258 Carbohydrate Esterase AT5G07410 28.571 2.81e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00468 K01051 - gmx:100790786 242.662