Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00463 ATGGAGGAGCATGAAGAAGAAATTGTAGATACTAAAACTACAGATCATAAGGCCTCTTCAAAATCAGTGGCCAACGGAGAAGTTGATGGTTTTTCAAAGAGTGGAAGTAAACCTAAAGAAGAAAAATCATTCCTTATTAAACAAGAAGAACGGGAAACAGGGGTTTTCTCTTCTTCAAATCCAATTTGGATGGCGGCGGCGTCACGACGGCTCCAGGACATTCAATCACAGGCGGCGAACAAGATATGTGTTGACTACACCCAGAAGAACCCGCAGTGGGCCTCTGTATCGTACGGCGTCTTCATGTGTTTGGAGTGCTCCGACAAGCACTGTGGCTTGGGCGTTCACATCTCCTTCGTCCGATCTATCACCATGGACTCTTGGTCCGAAGTCCAGATCAAGAAAATGGAAGTTGGCGGCAACGATAAGCTACTACCTGCAATTTGTAAGCGGCAATTTGTAAGCTACAACCTTCAATATGCAACCTTCAATATGCAACCTTCAATATGCAACCTTCGACATGCAAACTTTAACCTGCAATCTACAACATACAACTTGTAA 561 0.4421 MEEHEEEIVDTKTTDHKASSKSVANGEVDGFSKSGSKPKEEKSFLIKQEERETGVFSSSNPIWMAAASRRLQDIQSQAANKICVDYTQKNPQWASVSYGVFMCLECSDKHCGLGVHISFVRSITMDSWSEVQIKKMEVGGNDKLLPAICKRQFVSYNLQYATFNMQPSICNLRHANFNLQSTTYNL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00463 186 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 65 146 IPR044519 GO:0005096|GO:0016192
Vian1g00463 186 Gene3D Arf GTPase activating protein 63 168 IPR038508 -
Vian1g00463 186 MobiDBLite consensus disorder prediction 1 17 - -
Vian1g00463 186 ProSiteProfiles ARF GTPase-activating proteins domain profile. 68 143 IPR001164 GO:0005096
Vian1g00463 186 PRINTS HIV Rev interacting protein signature 99 116 IPR001164 GO:0005096
Vian1g00463 186 PRINTS HIV Rev interacting protein signature 120 141 IPR001164 GO:0005096
Vian1g00463 186 PRINTS HIV Rev interacting protein signature 80 99 IPR001164 GO:0005096
Vian1g00463 186 MobiDBLite consensus disorder prediction 1 43 - -
Vian1g00463 186 SUPERFAMILY ArfGap/RecO-like zinc finger 69 144 IPR037278 -
Vian1g00463 186 SMART arf_gap_3 65 169 IPR001164 GO:0005096
Vian1g00463 186 Pfam Putative GTPase activating protein for Arf 69 144 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00463 Vian-Chr1 4280618 4281963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00463 65 151 C2H2 Transcription Factor Family AT4G05330 38.947 1.23e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00463 K12492 - vum:124827671 153.295