Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00456 ATGGCATCAAGGAAAGTTTTTAACCAATGCTTGGTTCTGCCAATCTTGCTGATGAATTGCTCTGTTTTGCTGGTTCAATGTGGTAGGCCACATAGCACAGAAGGAGAGGATTTGGTGACAGCAACCTGCAAACACACCCTTCATTTCCAAGTATGCAATTCTTCCCTAAGATCAGTCCCTATTAGTGGCAAGACATCAGATCTCAGAGTGCTTGCTGAGATAGCACTGAATCTCAGCACAGCATATGCTGCAGAAACTTTGACCTGTGTTCATGAACTGCAGTCCAATTCTTCCGCTGCTAATAACATTTACGTGTCCCGTTGCTTAAGAGACTGTGAAGAGGAATTCTCGGAAGCCATAGAGAACTTGCAGCACTCAAAAGAAGCACTTGCCAATGGAGATTGTGACAAAGTGGATACATTGATTTCTGCTGCCATGTCTGATGCTGAGACATGTGAGGATGGCTTCAAGGACTTGCAGCAAATTGAGGACTATTATTCAACTTCTCCTCTAACTGAACGTAACTGTCATTTCTCTGAACTATGTAGTAATGCTCTTGCTATCACAAAATTACTAGTTTGA 582 0.4261 MASRKVFNQCLVLPILLMNCSVLLVQCGRPHSTEGEDLVTATCKHTLHFQVCNSSLRSVPISGKTSDLRVLAEIALNLSTAYAAETLTCVHELQSNSSAANNIYVSRCLRDCEEEFSEAIENLQHSKEALANGDCDKVDTLISAAMSDAETCEDGFKDLQQIEDYYSTSPLTERNCHFSELCSNALAITKLLV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00456 193 Coils Coil 109 129 - -
Vian1g00456 193 SMART PMEI_2 34 188 IPR006501 GO:0004857
Vian1g00456 193 PANTHER PECTINESTERASE INHIBITOR-LIKE 15 192 - -
Vian1g00456 193 NCBIfam pectinesterase inhibitor domain 15 192 IPR006501 GO:0004857
Vian1g00456 193 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 193 IPR035513 -
Vian1g00456 193 Pfam Plant invertase/pectin methylesterase inhibitor 37 188 IPR006501 GO:0004857
Vian1g00456 193 FunFam Invertase/pectin methylesterase inhibitor family protein 34 193 - -
Vian1g00456 193 CDD PMEI-like_1 38 192 - -
Vian1g00456 193 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 192 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00456 Vian-Chr1 4213698 4214279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00456 32 190 Carbohydrate Esterase AT1G53830 27.545 4.56e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00456 - - gmx:100785210 288.115