Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00453 ATGGCAATTCCTAAACTTTTCCTCCTTCTTTTGGCATACTTCTTCTCACATGCCATAGCTGTTAAGTCCTCCAATGCTTTCACAATCCCAACATTCCATGCAAACCACTCTTCCTTAAATAGAACAAACTTATTTCATGAAGTCAGCTTCGGTTCCTCTAAGCTTTCCATCTCAATAAACATAAATCCAAACATCATCAACACCCTCCTTCAGTCCCTCCAAGCAGCAATATCTGATGCCACAAAACTATCTGATCTATTAAACAATGCAGGACACTCAAGCATCATAGAGAACAAAATAGGAGCAGTCCAAGACTGTAGAGAACTTCAACAATCCACCTTAGCTTCCTTAGAACGATCGCTATCAGGAATCCGTTCCCAAGACTCCAGAAAAGTAGTTGATGCAAGAACCTACCTCAGTGCAGCCCTCACCAACAAAGGCACGTGTCTGGAGAGCTTAGATTCTGCTTCGGGTACCCTTAAGCCAGTTCTGGTGAATTCTGTGATAAACTCTTACAAGCATGTCAGTGACTCTCTCTCAATGCTCCCTAAGCCTGAGAAGAAGGCTTCCCAAGGACACAAGAACCGGCGTTTGTTGTGGTTGTCAAGGGCAAACCATCGCCTCTTGGAAGGCAATGATGGGGTGCTTGTTGTAGCTGCAGATGGAACGGGGAAGTTTAGCACCATCACCGAGGCTATCAACTTTGCTCCAAACAACAGCGTTGGTAGGACAGTAATCTATGTCAAAGAAGGGACTTACGAGGAAAATGTTGAAATCCCAAGTTATAAGACCAATATTGTTCTGCTTGGCGATGGAAAGGATGTAACTTTTATCACTGGCAGCAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTCTGGCGGTCTCTGGAGAGGGTTTTCTTGCACGTGATATTGCTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCCTTGAGAGTGAATGCAGACTTCACTGCATTCTACAGGTGTGCCATGTATGGTTACCAAGACACTCTCTATGTTCACTCCTTTAGACAGTTCTACAGAGAGTGTGACATTTTTGGGACCATAGATTACATATTTGGGAATGCAGCGGTGGTTTTTCAAGCATGCAACATCGTGTCTAGAATGCCAATGGCAGGCCAATTCACTGTCATTACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATTTCAATCCAAAACTGCTCCATTCTAGCTACCACAGACTTGTATTCCGATTCTGGTAGTGTGAAAAGCTACCTAGGAAGACCATGGAGGGTTTATTCTCGTACCGTGTATCTTGAGTCCTACATTGATGCATTTATTGAGGCAGAGGGGTGGACCCAGTGGTCTAATGATGAAGGCTTGGACACTTTGTATTATGGAGAGTATGCCAACTATGGGCCTGGTTCAGGGACAGATAACAGAGTAGATTGGGCTGGGTACCACTTAATGGATTACGACAGTGCCTACAATTTCTCAGTTTCGGAATTTATCATTGGTGACGCTTGGCTTGGGTCTACATCATTCCCTTATGACAATGGGATTTAA 1578 0.4461 MAIPKLFLLLLAYFFSHAIAVKSSNAFTIPTFHANHSSLNRTNLFHEVSFGSSKLSISININPNIINTLLQSLQAAISDATKLSDLLNNAGHSSIIENKIGAVQDCRELQQSTLASLERSLSGIRSQDSRKVVDARTYLSAALTNKGTCLESLDSASGTLKPVLVNSVINSYKHVSDSLSMLPKPEKKASQGHKNRRLLWLSRANHRLLEGNDGVLVVAADGTGKFSTITEAINFAPNNSVGRTVIYVKEGTYEENVEIPSYKTNIVLLGDGKDVTFITGSRSVIDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVFQACNIVSRMPMAGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSDSGSVKSYLGRPWRVYSRTVYLESYIDAFIEAEGWTQWSNDEGLDTLYYGEYANYGPGSGTDNRVDWAGYHLMDYDSAYNFSVSEFIIGDAWLGSTSFPYDNGI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00453 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 182 IPR035513 -
Vian1g00453 525 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Vian1g00453 525 SMART PMEI_2 35 181 IPR006501 GO:0004857
Vian1g00453 525 FunFam Pectinesterase 211 525 - -
Vian1g00453 525 FunFam Pectinesterase 32 184 - -
Vian1g00453 525 CDD PMEI-like_3 69 187 - -
Vian1g00453 525 Pfam Plant invertase/pectin methylesterase inhibitor 72 181 IPR006501 GO:0004857
Vian1g00453 525 Gene3D - 213 525 IPR012334 -
Vian1g00453 525 PANTHER PECTINESTERASE 65 515 - -
Vian1g00453 525 Pfam Pectinesterase 216 511 IPR000070 GO:0030599|GO:0042545
Vian1g00453 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 184 IPR035513 -
Vian1g00453 525 NCBIfam pectinesterase inhibitor domain 64 182 IPR006501 GO:0004857
Vian1g00453 525 SUPERFAMILY Pectin lyase-like 214 522 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00453 Vian-Chr1 4190331 4192291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00453 37 525 Carbohydrate Esterase AT2G26440 65.294 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00453 - K01051 gmx:102666380 893.649