Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00452 ATGGCTGTTTCTCCAGTTAGATATCGTTCCACCCTCGCATGCTCCTTCTGCTGCCTTTTCTTTCTGGCACTTTGCTCCCCTCTCACCGCCGCCACAGACTTCGCCGGTTCAGCCTGCCTCGGGGTCTCCCCCAGCCAGTTCGCCGGCTCACTCACCCAAGTCATCACCGCCATCAAACAACTCGCGTCCATTCTCTCACGCTTCTCTATGCCATTCGCAGACTTCCGCCTCGCCACTGCCGTCGCCGACTGCCTCGACTTGTTCGACATCTCCTCCGACGTTCTCTCCTGGGCCCTCTCCGCCTCTCAGAACCCCAAAGGGAAGCATAACAGCACGGGGAACCTGAGCTCCGATTTGAGGACATGGCTAAGTGCGGTACTTTCGCATCCACAAACTTGCATGGATGGATTCGAAGGGACGAACGGCATTGTGAAGAGTTTGGTATCCGCTGGCATCGGCGAAGTGGTATCGCTGGTGGAGCAGCTTCTTGCGCAGGTGGTGCCAGTAAACGATGAATTTGAAGCCAGCCAGGAGCAATTTCCTTCGTGGATTAAACCCAGGGAAAGGAAACTTCTGCAATCGATTGGAGTGACTCCTGATATTGTGGTAGCTTTGGATGGGAGTGGGAACTACGCTAGGATCATGGATGCGGTCCTCGCGGCACCTGATTATAGCATGAAACGGTTTGTGATTTACATAAAGAAAGGTGTTTATTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAACATCATGATGATTGGAGATGGAATGGGCGCCACCGTGATCTCCGGTAACCGGAGTTTCATCGACGGTTGGACCACCTTCCGCTCATCTACATTCGCTGTGAGTGGCAGAGGGTTCATAGCAAGAGACGTTTCCTTTCAGAACACGGCAGGGCCTGAGAAGCACCAAGCAGTGGCGCTGAGATCAGACTCGGATCTCTCTGTGTTCTACCGATGTGGGATTTTCGAGGGGTGGTTGGAGTGGAATGGAGACTTTGCTTTGGACACATTGTATTATGCAGAGTACCTGAACACTGGGGCAGGTGCTGGCGTGGCGAACCGTGTGAAATGGACAGGGTACCATGCATTCAATGATTCAAGCCAGGTGAGTAACTTCACGGTGGCTCAGTTTATTGAGGGGAATCTCTGGTTGCCTTCCACTGGAGTAACCTACACTGCTGCATTCAAAGCTTAA 1200 0.525 MAVSPVRYRSTLACSFCCLFFLALCSPLTAATDFAGSACLGVSPSQFAGSLTQVITAIKQLASILSRFSMPFADFRLATAVADCLDLFDISSDVLSWALSASQNPKGKHNSTGNLSSDLRTWLSAVLSHPQTCMDGFEGTNGIVKSLVSAGIGEVVSLVEQLLAQVVPVNDEFEASQEQFPSWIKPRERKLLQSIGVTPDIVVALDGSGNYARIMDAVLAAPDYSMKRFVIYIKKGVYFENVEIKKKKWNIMMIGDGMGATVISGNRSFIDGWTTFRSSTFAVSGRGFIARDVSFQNTAGPEKHQAVALRSDSDLSVFYRCGIFEGWLEWNGDFALDTLYYAEYLNTGAGAGVANRVKWTGYHAFNDSSQVSNFTVAQFIEGNLWLPSTGVTYTAAFKA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00452 399 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 15 162 IPR035513 -
Vian1g00452 399 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 167 IPR035513 -
Vian1g00452 399 CDD PMEI-like_4 14 170 - -
Vian1g00452 399 SUPERFAMILY Pectin lyase-like 196 394 IPR011050 -
Vian1g00452 399 Pfam Pectinesterase 325 383 IPR000070 GO:0030599|GO:0042545
Vian1g00452 399 Pfam Pectinesterase 200 323 IPR000070 GO:0030599|GO:0042545
Vian1g00452 399 SMART PMEI_2 30 165 IPR006501 GO:0004857
Vian1g00452 399 Gene3D - 194 324 IPR012334 -
Vian1g00452 399 Gene3D - 325 399 IPR012334 -
Vian1g00452 399 PANTHER PECTINESTERASE 325 387 - -
Vian1g00452 399 Pfam Plant invertase/pectin methylesterase inhibitor 51 150 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00452 Vian-Chr1 4185299 4188929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00452 326 397 Carbohydrate Esterase AT3G43270 65.278 9.82e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00452 K01051 - gmx:100814987 515.768