Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00447 ATGGGATTCTACATCGAAGACCCTCTCTCCGGCTTCACAATAGGCCAGGCCATATACGAGGCTGCTCTCATCATTGCAGTTCTCAGATGCCTCTTCTGCTTCCTCTTCAGACTCATCAACGACACAACCACAACGTCTGAAGACACCCCACCTGAATCCTGTCCTCAGACCACAAGGGAGAGGGACACCACCCTTTTGCTCACCACCTTCGGAGACATTAAGGAGAGGCTGCCACAGACCGAGGACACGTGTGCGGTTTGCCTCAGCCAGCTGGAGATGGAGGACGAGGTTCGGGAGCTCATGAACTGTTACCACGTGTTCCACAGAGAGTGCATAGACAGATGGCTGGAGCACGAGCACGAGAATCACAACCCCACGTGTCCACTCTGCAGAGCCCCTTTGCTGAGTTCTTGCTGCCACCACTACTCTGCCGCTTGTCAGCCTCCTCCTCAGCCTAGTTGGGCTGTTGAGAGACTTCTCTATCTCTTCGGCGATGATTTGCTACCTTGCTAG 513 0.5439 MGFYIEDPLSGFTIGQAIYEAALIIAVLRCLFCFLFRLINDTTTTSEDTPPESCPQTTRERDTTLLLTTFGDIKERLPQTEDTCAVCLSQLEMEDEVRELMNCYHVFHRECIDRWLEHEHENHNPTCPLCRAPLLSSCCHHYSAACQPPPQPSWAVERLLYLFGDDLLPC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00447 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 137 IPR013083 -
Vian1g00447 170 SUPERFAMILY RING/U-box 78 136 - -
Vian1g00447 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 27 168 - -
Vian1g00447 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
Vian1g00447 170 SMART ring_2 84 130 IPR001841 -
Vian1g00447 170 Pfam Ring finger domain 82 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00447 Vian-Chr1 4120118 4120630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00447 1 167 C3H Transcription Factor Family AT5G20885 45.604 2.42e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00447 K16281 - gmx:100306203 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00447 1 4120118 4120630 Vian1g00447 1 4120118 4120630 ECH