Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00445 ATGGCTGGTGTGAACACCCTGCCAGAAGAAAGGTGGAACCTTTTTCCTTCTTCTGCTATGGAGATTGCTCTTGACAGTGTTGATGGAAGGGGTGAGAACATGGAGGTCCACAACACCATAACTGATGATGCCTCTGTGCATTTCTCTGCTACCAGGCCAGTGGCAGTGCCATCATCTGGACCGATCAAAGTGATTCCAAATCCAACCAAGTTCACCATCCTCTATAAGGGGAATATGTGTGTTTATGAAGGAATTCCCGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGAGGGGTCCCTTGGACTTCACTCATTTCAAAAAGTCCTTCTTCTCTACTGGGAAACTCTACTGATTCAGCAAAGAAGAGTTCCATTCGAAGGCTGCAAGATGAATTTCCTCTTGCACGCAGACAATCACTTCAAAGGTTTCTTGAGAAGCGAAGAAACAGGTTGGCTAACAAAGCACCTTACGCCTCAAGTAAAAACATGGCTGACAACATAGAGAACAGCTTCTTCTCTGAAATGTCACATTTTGGTTCTTTGAACTATCAGAAGAGGAATTTCAGCTCAGTGTTGTCGCCTCTTTAA 621 0.4412 MAGVNTLPEERWNLFPSSAMEIALDSVDGRGENMEVHNTITDDASVHFSATRPVAVPSSGPIKVIPNPTKFTILYKGNMCVYEGIPAEKVREIMLIASVSAKSAEMKRGVPWTSLISKSPSSLLGNSTDSAKKSSIRRLQDEFPLARRQSLQRFLEKRRNRLANKAPYASSKNMADNIENSFFSEMSHFGSLNYQKRNFSSVLSPL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00445 206 Pfam tify domain 66 98 IPR010399 -
Vian1g00445 206 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Vian1g00445 206 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 53 175 IPR040390 -
Vian1g00445 206 SMART tify_2 64 99 IPR010399 -
Vian1g00445 206 Pfam Jas motif 144 168 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00445 Vian-Chr1 4095261 4097310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00445 16 171 Tify Gene Family AT5G20900 35.329 3.25e-19 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vian1g00445 tify 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00445 K13464 - gmx:100306282 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00445 1 4095261 4097310 Vian4g00406 4 4670526 4673936 PCT