Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00439 ATGATTGTTGTTGAATGTAGGAAACATGTGAGCATAAAGAACAGGCTTGGAGCTGGAAAGAATATGACTTTGCATTGCCAGTCGAAGGACAATGATCTGGGACAACAAACTATAGCAAATGGAGATGAGTTTGGGTGGGATTTCTCAGACAATATTATTGGAACAACACTGTTTTTCTGTGATGTGGGGTGGGAAAAGGTTGAGGAATACCATTTCAATGCTTATTCCTTCGGCAGGGACAGAGTACGATGTGATGGTGTCGGCTGTTCATGGCTCCTATCTGCTGAAGGCATTTATGGCTTCAATGTACAAACGGCCTTCTGGGAATTCATGTACCAATGGCGAAATTAA 351 0.4245 MIVVECRKHVSIKNRLGAGKNMTLHCQSKDNDLGQQTIANGDEFGWDFSDNIIGTTLFFCDVGWEKVEEYHFNAYSFGRDRVRCDGVGCSWLLSAEGIYGFNVQTAFWEFMYQWRN 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00439 116 PANTHER - 5 102 IPR010264 -
Vian1g00439 116 Pfam Plant self-incompatibility protein S1 9 114 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00439 Vian-Chr1 4042586 4042936 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00439 7 114 Carbohydrate Esterase AT3G16970 30.909 7.98e-12 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00439 - - vra:106767420 241.506