Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00434 ATGAGCCAAAGAGGCAAGAGTTTTGGAGGCATGAAGCTGCTGAAGCAGAGGATGGTTTTGTTTGTGGGGTTGGCGATATTGAAATGGGTAGAAGGCATGGAGGATACTAATGTGACAGATATAGATATGCTATATGTCAACGGAAGAGGATTCTACAGACCTTTGATGGTTGGGCTTACACTTATTAATGGTGCTGCTGCTAAAGGAGCTGTCTGCCTGGATGGATCATTACCAGGTTACCACTTCCATCGGGGATATGGTTCGGGATCAAACAGTTGGCTTATACAATTGGAGGGAGGAGGCTGGTGTGGAACTATAAAAAATTGTCTTTACAGTAAGAAAACACGTCATGGTTCTTCATTCTTTATGGAAAAACAGATACCATTTATTGGGATATTGAGCAACAAAGCTGAGGAAAATCCAGATTTTTTCAATTGGAATAGAATAAAAATCCGTTATTGTGATGGGGCATCATTTAGTGGGGACAGTCAAAATGCGGGAGCAGGATTATATTTCAGAGGGCAACGCATTTGGCAAGCTGCTATGGAAGATCTAATGTCAAAAGGAATGCACTATGCCAAACAGGCTCTTCTATCTGGATGTTCCGCAGGAGGTTTAGCTGCCATTATACATTGTGATGAATTTCGGGAATTGTTTCCCAGAACCACAAGAGTAAAATGCCTGAGTGATGCTGGATTGTTCCTTGATTCTGTTGATGTGTCTGGCCGTCGCAGCTTGAGGAATTTGTTTGGGAGTGTGGTCACCTTACAGGGAGTGCGAAACAGCCTTCCAAGAAGTTGCACCAGTCGCCTCAATCCAATTTTGTGCTATTTTCCTCAGCACTTAATTGCCAGTGTTAGGACACCACTGTTTCTTCTCAATGCAGCTTATGATACTTGGCAGATTCAAGCCAGTCTTGCTCCACCATCTGCTGACTACCGATGGAACTGGTATGAATGCAGAAAAGATTATGCACGTTGCAGTGCACCACAGATACAGTATCTTCAAGGTTTTCGAAATCAGATGCTTAGATCTACAAGAGCCTTCTCACGGTCTTACAAAAATGGGCTATTCATAAATTCATGTTTCGCACATTGTCAATCAGAAAGACAAGATACGTGGTTTGCTCGTGATTCTCCTCGTATAGGAAACAGAGGAATCGCAGAGTCTGTTGGGAACTGGTTTTTTGACCGAGTTAGTGTCCAGGCTATTGGTTGTCCTTACCCTTGTGACAAAACCTGCCATAATTTGGTTTTTAAGTGA 1263 0.4283 MSQRGKSFGGMKLLKQRMVLFVGLAILKWVEGMEDTNVTDIDMLYVNGRGFYRPLMVGLTLINGAAAKGAVCLDGSLPGYHFHRGYGSGSNSWLIQLEGGGWCGTIKNCLYSKKTRHGSSFFMEKQIPFIGILSNKAEENPDFFNWNRIKIRYCDGASFSGDSQNAGAGLYFRGQRIWQAAMEDLMSKGMHYAKQALLSGCSAGGLAAIIHCDEFRELFPRTTRVKCLSDAGLFLDSVDVSGRRSLRNLFGSVVTLQGVRNSLPRSCTSRLNPILCYFPQHLIASVRTPLFLLNAAYDTWQIQASLAPPSADYRWNWYECRKDYARCSAPQIQYLQGFRNQMLRSTRAFSRSYKNGLFINSCFAHCQSERQDTWFARDSPRIGNRGIAESVGNWFFDRVSVQAIGCPYPCDKTCHNLVFK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00434 420 Pfam Pectinacetylesterase 55 399 IPR004963 GO:0016787
Vian1g00434 420 PANTHER NOTUM-RELATED 38 416 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00434 Vian-Chr1 4011712 4016011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00434 56 420 Carbohydrate Esterase AT1G57590 68.219 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00434 K19882 - gmx:100791571 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00434 1 4011712 4016011 Vian1g00434 1 4011712 4016011 ECH
Vian1g00434 1 4011712 4016011 Vian2g02745 2 48388310 48394054 ECH
Vian1g00434 1 4011712 4016011 Vian3g01529 3 16655137 16662921 ECH