Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00433 ATGGGAACATTAGAGCAAATCGATGCTCCTCATACCCAGTCATCATCATCTTCGTCTTCTTCCATTGATAGCAACAACCACCCTTCTACCACTCCACCACCCTCTTCCTCCCCTTCATCTAGTGTCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATATCTCCTTTGTCTCAATCCGAATCACCTTTCAATTCAACACCAAGGGAGGAAAGTTTCAACTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTCAGCCCAAAACCATCTTTATTTGTGAAAGTCTACATGGAAGGCATCCCCATCGGAAGAAAATTAAATCTGATGGCACATTATAGCTATGACGGACTGGTGAAAACTCTGGGCCATATGTTTAGGACCACCATTCTGTGTCCAAACTCTCAACCACTCAGTTTTGGGAATATTCACGTGCTAACTTACGAGGATCAAGAAGGGGACTGGATGATGGTCGGAGATGTACCTTGGGAGATGTTCTTGAACAGTGTGAAGAGGTTGAAGATCACGAGAGCTGACAGATGCTAG 582 0.4519 MGTLEQIDAPHTQSSSSSSSSIDSNNHPSTTPPPSSSPSSSVCRNRTDLSTDLRLGLSISPLSQSESPFNSTPREESFNWPPIKSILRSTLVGKQSHLSPKPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTTILCPNSQPLSFGNIHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00433 193 Gene3D - 98 193 - -
Vian1g00433 193 MobiDBLite consensus disorder prediction 1 45 - -
Vian1g00433 193 SUPERFAMILY CAD & PB1 domains 96 187 - -
Vian1g00433 193 ProSiteProfiles PB1 domain profile. 103 192 IPR000270 GO:0005515
Vian1g00433 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 49 191 IPR003311 GO:0005634|GO:0006355
Vian1g00433 193 Pfam AUX/IAA family 70 189 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00433 Vian-Chr1 3999867 4000793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00433 106 193 B3 DNA Binding Superfamily AT2G46530 36.364 4.26e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian1g00433 AUX_IAA 1.4e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00433 K14484 - gmx:100527448 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00433 1 3999867 4000793 Vian1g00433 1 3999867 4000793 ECH