Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00428 ATGGAGGACAAAGTTGCATTCAAAAATTTGCTGCAAGATCAGAAAAAGGCATGTGTTAGTAGCACAGATGCACTGAACTGGACTCAGGAACCATCCATCAGAAACACTCTAGGATCTACTCTTCTCGGTTTGAGTCTCAATAACTTGGAGCTTCCCCAAAATCTTGAGCAAGATCCTCTGAACCAACTGGGATTGTTGCAAGTTGAGCTGGAGGAGGTGAAGAAGGAGAATCAAAATTTAAGGTCAATGCTTCATGAGATCAGTGAACACTACGCTGCTCTTCAGAATCAGTTATTATTGGTGATGCAGCAAAAGAAACTCTCTTCATCTCCGAATCATGAGGACATGCAGGCAAGTAAAATCAATAACCAAGTAACACCAGAAGAAGCAAAAATCATAGAAGATCAGGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTATCTGTAAGAGCACCGTCATCAGAATCTTTGGGTGATGGGTGTCAATGGAGAAAATATGGACAAAAGATATCAAAGGGTAACCCTTGTCCACGGGCCTACTATCGTTGCAACATGGGAACATCATGTCCAGTTCGCAAACAGGTTCAAAGGTGTGCTTCCGATGAAAGTGTTGTGATCACAACCTACGAGGGGACTCATAATCATTCACTCCCTCCACCAGCCAGATCCATGGCTTCCACAACATCAGCAGCACTCACCATGTTCCTTTCTGGCTCGACCACTAGTTCAGCTTCTACCTACTATCCATCTGCATCATCTTGTCCCACTGTAACACTTGACTTAACCCAGCCCACTAAGAACTACCTCAAATTCCCAACTTCAAACCATTCTCAAACTTTCCCTCTTTCAATCAATGCCTACCCTCACAACTATGAAGGATTACCTTCAGAGAAAGACCTTTCCTTGGTCGATGTTCTTAGTGCTGCCATCACTAGGGATCCTTCTCTTAGGGCAGCCTTAGAAGCAGCCGTTTCCTCTATGATTGCAGATTCTCAGAACATCAACAATCAGCAAGTGCAGAGAAGATGA 1029 0.4383 MEDKVAFKNLLQDQKKACVSSTDALNWTQEPSIRNTLGSTLLGLSLNNLELPQNLEQDPLNQLGLLQVELEEVKKENQNLRSMLHEISEHYAALQNQLLLVMQQKKLSSSPNHEDMQASKINNQVTPEEAKIIEDQAFEASCKKARVSVRAPSSESLGDGCQWRKYGQKISKGNPCPRAYYRCNMGTSCPVRKQVQRCASDESVVITTYEGTHNHSLPPPARSMASTTSAALTMFLSGSTTSSASTYYPSASSCPTVTLDLTQPTKNYLKFPTSNHSQTFPLSINAYPHNYEGLPSEKDLSLVDVLSAAITRDPSLRAALEAAVSSMIADSQNINNQQVQRR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00428 342 Pfam WRKY DNA -binding domain 159 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00428 342 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00428 342 Gene3D WRKY domain 142 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g00428 342 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g00428 342 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00428 342 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 60 336 IPR044810 GO:0003700
Vian1g00428 342 Coils Coil 63 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00428 Vian-Chr1 3946544 3950721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00428 130 263 WRKY Transcription Factor Family AT4G04450 58.710 3.68e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g00428 WRKY 1.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00428 - - var:108340459 608.986